Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03507 ATGCTAGCATGTACTAACAGCATCTTCCATGGCCCTACCACATTCCACCGCCAATCCCAGCCTTCTAAATTCCTACTCTCTAAGCCTCTTCTCTTCCCTCCCCTCCCTCGCGTAGTCAATTTCCGGAAATTAAAGTTCCATTCTCCGTTTTCCGGTAAGAATAGTTGCCGCCGTTTCGATGTTAAATCTTCGGTTGATTCATCGTCAGGAGTTTTGGAGTCCATTGATATTAGTGTCCCGCACAGCTCCCTGCAAAAGCATTCCGTGAAGATTCCTGTTGGCGATAGACATATTTTGGTTGAGACTGGTCACATGGGAAGGCAAGCAAGTGGTTCTGTTACAGTTACGGATGGGGAGACCATTGTGTACACCACTGTTTGTTTGGATGATACTCCTAGTGAGCCATCCGATTTTTTCCCCCTTTCTGTGAATTATCAAGAGCGTTTTTCAGCTGCTGGTCGCACTAGTGGAAGTTTCTTCAAACGAGAAGGAAAAACAAAGGATCACGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTGCGTCCTACTATGCCTAAGGGATTCTACCATGAAACTCAAATATTATCTTGGGTTTTAAGCTATGATGGATCGCATGCCCCCGATTCCTTAGCCATCACTGCTGCTGGTATAGCACTTGCACTTTCAGAAGTGCCTATGTCAAAAGCAGTTGCTGGAGTTCGAGTTGGCCTCATTGGTGATAAGTATATAGTAAATCCTACAACTGAAGAGATGGAAAACTCTGAGTTGGACCTCATGCTGGCGGGCACAGATAGTGCAATATTGATGATAGAGGGTTATGGCAATTTTCTTCCAGAAGAGAAGTTACTTAAAGCTGTAGAAGTCGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCCTTGGTCAAGAAATGTGGGAAGCCAAAGATGATTGATGCCATCAAGTTACCTCCTTCTGAGCTTTATAAACATGTTGAGGAAATCGCTGGTGATGAGTTGGTAAAAGTTCTTCAAATTAGAAATAAAATACCAAGAAGGAAAGCCCTATCATCATTGGAAGAAAGGGTTCTTAAGATACTGACAGAAAATGGGTTTGTCATTGATGAATCAGCACCGAGGAGTAATGCTGAAACAATCGCAGAGATTCTTGAGGATGAGGATGAAGATGAAGTAATTGTTGATGGTGAAGTTGATGAAGGCGATGTTCATATAAAGCCAACTCCACGCAAACCAACGCCTTTATTTTCTGAGGTAGATGTGAAGTTGGTATTTAAAGAAGTTACATCCAAGTTTTTGAGGAAACGCATAGTAGAGGGTGGGAAAAGGAGTGATGGGAGAACACCAAAAGAAATCCGCCCAATTAACTCAAGTTGTAGCATATTACCTAGAGCACATGGAAGTGCTCTTTTTACGAGGGGCGAAACACAGGCACTGGCTGTTGCTACGCTTGGAGATAACAAGATGGCACAACGAATAGACAATCTTATAGAAGTTGATGATTATAAGAGGTTCTATCTGCAGTATTCGTTTCCCCCTTCATGTGTTGGGGAGGCGGGCCGTATTGGTGCACCGAGTAGAAGAGAAATTGGTCACGGAATGCTTGCTGAGAGATCTCTTGAAACAATTTTGCCTGCTGATAAGGACTTCCCTTACACTATTCGTGTTGAAAGTACCATCACAGAAAGCAATGGCTCTTCGAGCATGGCGTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGTGCTCAATTGCTGGAATTGCTATGGGTTTGGTTCTTGACACCAAGGAATTTGGTGGAGATGGAACCCCGCTTATTCTGTCAGACATAACTGGATCTGAAGATGCATCTGGCGATATGGATTTTAAGGTTGCTGGGAATGAAGATGGCATAACTGCATTTCAGATGGACATTAAGGTTGCTGGAATTACTTTGCCCATAATGAGAGAAGCACTGCTACAGGCAAGAGACGGCAGGAAGCATATACTTGGAGAAATGATGAAATGCTTGCCCCCTCCAGCCAAAAGTCTTTCCAAGTATGCTCCTTTGATTCACATTATGAAGGTCAGACCGGATAGAATAAATCTTATAATTGGCTCTGGTGGGAAAAAAGTGAAGAGCATTATTGAGCAATCTGGAGTAGAGGCTATTGATACCGAAGATAATGGCACTGTAAAAATATTTGCAAAAGATTTGGCTAGTTTAGAGAAGTCTAAGGCTATCATTAGTAATTTGACAATGGTTCCAAATATTGGTGATATATATAGGAATTGTGAAATTAAAACAGTAGTTCCATATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTTTGCCATATTAGTGAACTGAGTTCAGGTTGGCTAGCTAAGGCGGAAGATGTGTTCAAGGTCGGAGATCATATTGATGTAAAACTTATAGAGATAAATGAAAAGGGACAGCTGCGCCTTAGTCACCGAGCATTGCTTCCTGATGCAGATTCAGACAGTTCAAACTCGACTGATAAGGGTTCATTGGAAGAAGTAACCGGCCTGACAAATGCTGGTTTATTTGAAGAGAAAACTGAACAGCCTAATGATAAGGTTAACACACCCAAGGGCACAGCCTCATCTAAAAGAAGTTCAGAGGACAATTCCGTACTTCCATCAAAAAAGTTTATCAGGAGATCGGTAAGCCCTTCCCAGGAGAAACCTGTCACGAACAAAGACAAGATAAAGAAGAGCAGCAACAAAACAGTCAGTAGTGTCTCTAGCAAAGGTGAAAGTAGTTTGGTTGGTGAAGAGGCATAA 2817 0.426 MLACTNSIFHGPTTFHRQSQPSKFLLSKPLLFPPLPRVVNFRKLKFHSPFSGKNSCRRFDVKSSVDSSSGVLESIDISVPHSSLQKHSVKIPVGDRHILVETGHMGRQASGSVTVTDGETIVYTTVCLDDTPSEPSDFFPLSVNYQERFSAAGRTSGSFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGSHAPDSLAITAAGIALALSEVPMSKAVAGVRVGLIGDKYIVNPTTEEMENSELDLMLAGTDSAILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMIDAIKLPPSELYKHVEEIAGDELVKVLQIRNKIPRRKALSSLEERVLKILTENGFVIDESAPRSNAETIAEILEDEDEDEVIVDGEVDEGDVHIKPTPRKPTPLFSEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRIDNLIEVDDYKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPADKDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVAGITLPIMREALLQARDGRKHILGEMMKCLPPPAKSLSKYAPLIHIMKVRPDRINLIIGSGGKKVKSIIEQSGVEAIDTEDNGTVKIFAKDLASLEKSKAIISNLTMVPNIGDIYRNCEIKTVVPYGVFVEIAPGREGLCHISELSSGWLAKAEDVFKVGDHIDVKLIEINEKGQLRLSHRALLPDADSDSSNSTDKGSLEEVTGLTNAGLFEEKTEQPNDKVNTPKGTASSKRSSEDNSVLPSKKFIRRSVSPSQEKPVTNKDKIKKSSNKTVSSVSSKGESSLVGEEA 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03507 938 Gene3D - 399 686 IPR027408 -
Vivi6g03507 938 Pfam S1 RNA binding domain 766 829 IPR003029 GO:0003676
Vivi6g03507 938 MobiDBLite consensus disorder prediction 870 886 - -
Vivi6g03507 938 CDD S1_PNPase 760 828 - -
Vivi6g03507 938 Gene3D K Homology domain, type 1 687 759 IPR036612 GO:0003723
Vivi6g03507 938 MobiDBLite consensus disorder prediction 856 938 - -
Vivi6g03507 938 Pfam 3' exoribonuclease family, domain 2 230 292 IPR015847 -
Vivi6g03507 938 Gene3D - 83 310 IPR027408 -
Vivi6g03507 938 FunFam Polyribonucleotide nucleotidyltransferase 687 756 - -
Vivi6g03507 938 Gene3D - 760 831 IPR012340 -
Vivi6g03507 938 NCBIfam polyribonucleotide nucleotidyltransferase 419 830 IPR012162 GO:0003723|GO:0004654|GO:0006402
Vivi6g03507 938 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 685 754 IPR036612 GO:0003723
Vivi6g03507 938 FunFam Polyribonucleotide nucleotidyltransferase 1, chloroplastic 760 831 - -
Vivi6g03507 938 CDD KH-I_PNPase 688 757 - -
Vivi6g03507 938 SUPERFAMILY Ribosomal protein S5 domain 2-like 86 226 IPR020568 -
Vivi6g03507 938 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 321 450 IPR036456 GO:0003723|GO:0006396
Vivi6g03507 938 ProSiteProfiles Type-1 KH domain profile. 690 750 - -
Vivi6g03507 938 SUPERFAMILY Ribosomal protein S5 domain 2-like 426 623 IPR020568 -
Vivi6g03507 938 ProSiteProfiles S1 domain profile. 760 829 IPR003029 GO:0003676
Vivi6g03507 938 FunFam Polyribonucleotide nucleotidyltransferase 391 686 - -
Vivi6g03507 938 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 78 878 IPR012162 GO:0003723|GO:0004654|GO:0006402
Vivi6g03507 938 FunFam Polyribonucleotide nucleotidyltransferase 85 315 - -
Vivi6g03507 938 CDD RNase_PH_PNPase_1 87 313 - -
Vivi6g03507 938 SUPERFAMILY Ribonuclease PH domain 2-like 581 685 IPR036345 -
Vivi6g03507 938 SUPERFAMILY Ribonuclease PH domain 2-like 228 313 IPR036345 -
Vivi6g03507 938 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 85 832 IPR012162 GO:0003723|GO:0004654|GO:0006402
Vivi6g03507 938 Pfam 3' exoribonuclease family, domain 1 96 226 IPR001247 -
Vivi6g03507 938 Pfam 3' exoribonuclease family, domain 1 453 587 IPR001247 -
Vivi6g03507 938 SUPERFAMILY Nucleic acid-binding proteins 754 833 IPR012340 -
Vivi6g03507 938 CDD RNase_PH_PNPase_2 453 681 - -
Vivi6g03507 938 SMART S1_6 758 829 IPR022967 -
Vivi6g03507 938 SMART kh_6 689 754 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03507 Vivi-Chr6 127776119 127803296 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03507 K00962 - gmx:100785430 1335.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03507 6 127776119 127803296 Vivi6g03507 6 127776119 127803296 ECH