Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03500 ATGCACACTAACAACAACAACTCACAAGCTACCACCACCACCACCGCCATGAGCATTCTCTCTTCCCGAACAAGCTCCCGTTCCGTAACCGAAACCGTAAACGGTTCACACAAATTCGTAATCAAAGGCTACTCACTCGCTAAAGGAATGGGAGTCGGAAAACACATAGCCAGCGAGACTTTCACCGTCGGTGGTTACCAGTGGGCAATTTACTTCTACCCCGACGGTAAAAACCCCGAGGATAATTCCGCGTATGTTTCCGTTTTCATTGCGCTTGCTTCCGAAGGAACAGATGTTCGTGCTCTTTTTGAACTCACGCTGCTTGATCAGAGTCCGAATGGAAAGCATAAGGTTCATAGTCACTTTGATCGATCTCTTGAGAGTGGGCCTTATACTCTCAAGTATAGAGGCAGCATGTGGGGATATAAGCGGTTTTTTAAACGTGCTCAACTCGAGGCGTCATCCTTTCTTAAGGATGACTGTTTGAAGATAAATTGCACTGTTGGTGTTGTTGTGTCGTCTATAGATTGTTCTAAATTGACTACCATACATGTTCCTGAATCTGATATTGGATCGCATTTCGGCATGCTGTTAGAGAACGAGGAAGGCTCTGATGTTACTTTCTCTGTTGGCGGAGAAAGGTTTCACGCACATAAACTTGTTATGGCAGCTCGGTCAACTGCATTTGAAACTGAGTTTTTCAATAGGATGGAGGCAGATGATTGTGATGTTGTTGTTACGGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACGCACTTATAGAAGATGAAGAGTTCTTCATGTCAGGTTCATCGTTCATGCCTTCAATATCTGAAACATTTGCAGCAAAGTTATTAGCTGCTGCCGAAAAGTATGACTTGCCTAGACTTAAGCTGATGTGTGAGTCTGTACTTTGTAAAGATATATCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCCGATCGTCATCATGCTACGGAGTTAAAGTCCATATGTCTACAATTTTCAGCTGAAAACCTTATTGGTCCAAAAAAATAG 1059 0.4268 MHTNNNNSQATTTTTAMSILSSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLTTIHVPESDIGSHFGMLLENEEGSDVTFSVGGERFHAHKLVMAARSTAFETEFFNRMEADDCDVVVTDMEPKVFKALLHFIYRDALIEDEEFFMSGSSFMPSISETFAAKLLAAAEKYDLPRLKLMCESVLCKDISIDSVAYILALADRHHATELKSICLQFSAENLIGPKK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03500 352 SUPERFAMILY POZ domain 182 313 IPR011333 -
Vivi6g03500 352 CDD BTB_POZ_BPM_plant 190 312 - -
Vivi6g03500 352 ProSiteProfiles MATH/TRAF domain profile. 34 168 IPR002083 GO:0005515
Vivi6g03500 352 SMART BTB_4 204 315 IPR000210 GO:0005515
Vivi6g03500 352 MobiDBLite consensus disorder prediction 1 29 - -
Vivi6g03500 352 FunFam BTB/POZ and MATH domain-containing protein 4 33 172 - -
Vivi6g03500 352 SUPERFAMILY TRAF domain-like 31 170 - -
Vivi6g03500 352 ProSiteProfiles BTB domain profile. 204 270 IPR000210 GO:0005515
Vivi6g03500 352 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 23 342 IPR045005 GO:0016567
Vivi6g03500 352 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 33 171 IPR008974 GO:0005515
Vivi6g03500 352 FunFam BTB-POZ and math domain 1 180 309 - -
Vivi6g03500 352 SMART math_3 39 151 IPR002083 GO:0005515
Vivi6g03500 352 CDD MATH 35 168 IPR002083 GO:0005515
Vivi6g03500 352 Gene3D Potassium Channel Kv1.1; Chain A 172 345 IPR011333 -
Vivi6g03500 352 Pfam BTB/POZ domain 196 313 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03500 Vivi-Chr6 127696283 127699093 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03500 K10523 - gmx:100818306 611.298