Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03472 ATGCAGACAAGGACGGTTCAAGTGAAGCAACTTTCAGATCTAGCTACTGAGAGAGAGATTTACGAATTCTTCTCGTTTTCTGGAGAAATTGAAAACATTCAGATCGTTAGAGAATATGGAAAGCCAAAGACTGCGTTTGTGACATTTAAGGATCCAAAAGCACTTGAAATTGCATTATTGTTATCGGGAGCAACAATAGTAGACCAGATTGTGAGTATTAGTCCCGTCGAGAACTATGTTGCAAATCGTGAGATGCAAGAAGCAAGGGCGGGGGAATATGCTATAACCATTGCTCCTTCTGAAGATGCCGCATTGAATTCTGAGGAGGAGAAACCCGGCGGTAGAGTATATCTTAGTAAAGCACAAGATGTAGTTACAAATATGCTGGCAAAAGGATCAGCGATAAAACAAGATGCGGTGAACAAAGCTAAAGCATTTGATGAGAAGCATCAATTGACTGCCAATGCATCAGCAAAGGTCAGTTCATTTGACAAGAGAGTTGGACTGACAGAGAAACTGACAGTTGGACTTTCTGTAGTGAATGAGAAAGTGAAATCTGTGGATCAGAGGCTACAAGTTTCGGATAAAACAATGGCAGCAATATTTGCAGCCGAGAGGAAGTTAAACGATACTGGATCAGCTGTCAAAACAAGCAGATACGTGACTGCCGGAACATCATGGTTAACGGGTGCTTTTAGCAAGGTGGCGAAAGCCGGAAACGTGGCTGGTACTAAAACTAGAGAAAAGTTTAATATGGCCGTTTCAAACTTGACAACAAAGGATACCTCATTGGTTGTATAG 801 0.417 MQTRTVQVKQLSDLATEREIYEFFSFSGEIENIQIVREYGKPKTAFVTFKDPKALEIALLLSGATIVDQIVSISPVENYVANREMQEARAGEYAITIAPSEDAALNSEEEKPGGRVYLSKAQDVVTNMLAKGSAIKQDAVNKAKAFDEKHQLTANASAKVSSFDKRVGLTEKLTVGLSVVNEKVKSVDQRLQVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLTGAFSKVAKAGNVAGTKTREKFNMAVSNLTTKDTSLVV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03472 266 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 3 252 - -
Vivi6g03472 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Vivi6g03472 266 Gene3D - 1 74 IPR012677 -
Vivi6g03472 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Vivi6g03472 266 SMART rrm1_1 5 74 IPR000504 GO:0003723
Vivi6g03472 266 SUPERFAMILY RNA-binding domain, RBD 2 86 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03472 Vivi-Chr6 127259726 127262759 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03472 - - mesc:110623615 396.356