Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03428 ATGGGTGCGAGTCGAAAGCTTCAAGGAGAGATAGATCGTGTTCTCAAGAAGGTTCAGGAAGGCGTTGAAGTATTCGACAGTATCTGGAACAAGGTTTACGACACAGACAATGCAAATCAAAAGGAGAAATTCGAGGCGGACCTCAAAAAGGAGATTAAGAAGCTCCAGAGGTATAGAGATCAAATTAAGACTTGGATTCAATCTAGTGAGATCAAGGATAAGAAGGTTAGTGCGGCATATGAGCAGGCCCTGGTAGATGCTCGGAAGTTAATTGAACGAGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACTAAGACGAAAGCATTTTCGAAAGAAGGACTGGGTCAACAACCGAAGACAGATCCGCGAGAGAAGGCTAAATCAGAGACGAGGGATTGGTTAAACAATGTGGTTGGAGAGTTAGAATCTCAGATTGATAACTTTGAAGCTGAGCTTGAAGGCCTTACAGTCAAGAAAGGAAAAAACAGGCCTCCTAGATTGACGCATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTAGTTTTGAGGCTTCTAGATAATGACGAATTGAGTCCAGAGCAGGTTAATGACGTGAAGGATTTCTTGGACGACTATGTAGAGCGTAATCAGGAGGATTTTGACGAATTTGATGATGTTGATGAACTATACATTTCATTACCTTTAGATAAGGTTGATACTCTAGAAGATCTTGTTACAATTCCCACAAGTGTTGCAGTTGCAAAGACAATCAGTTCATTGCCTTTAGACGAAGGGAAGATTCTAGAAGATCTTACAATTCCCACTGGTCTTGCAAAGGTGGCACCTGGTGTTAGCTTGAAGAGTCCTTTGGCAGTATCGGCATCACAGTCAGCGTCATCGCAAACATCTGAGCAAGCTGACGAGACAGCGTCTCAAGATAGCAATTCTGACATTGTGGCAAAAACTCCACCGCCTAAAAGTAGCGGAATCAGCTCTTCTGCTTCAACACCTACCGGGAACAATGCCACTCCTGCTTTTGCGAATGTTTCAGGTCATAACTTGTCCAGTTCTCCGGCTGCTGTGGTCCTTCCAGTCTCAAATTCTGTTCGAAATGTCTTGGAGAATGCTAATGTAAATCAGTTGGCCTCTACAAAGGAAGAAGATATTAACAGCTTCCCTAGCCGTAGGCCATCTCCTTCGCTTTCTGATGCAGCTCTTGTGCGGGGCAGAAACAGCTTGTCAAATCAAGCAACAGCCAGCATCCCTCTTGGTTCCGGAAACATGGTTTCTGGTAATGGAGCCTTTGGTTCACTCCCTTCAGCCTCAGAAATAACTAAGCGAAACATATTGGTAGCTGATGATAGACTTGGAAGTAGTGGAATGGTGCAACAACCTCTTGTATCACCGCTAAGCAATAGGTTGATCTTGCCTCAGGTTGGGAAGGCTAATGATGGAACTGCCTCTGTTGACTCTAGTACTGTTAATGAAGCTGCAGCTGTATCTGGGAGAGTTTTCTCCCCTTCTGTGGTTCCTGGTATGCAATGGAGGCCTGGAAGTCCTTTTCCGAATCAGAATGATGTGGGGCAGCTTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAAGTTTTTGCAGAAGTTTCAGCAAGTGCAACAACAAGGGCCCAGTACCCTTCTTAATATGCCTTCCCTTGTTGCAGGAAATCATAAGCAGTTTTCTTCCCAACAACAAAGTCCACTTTTGCAGCAGTTCAACTCTCAAGGCTCATCCGTTTCTTCACAATCTAGTATGGGACTTGGAGCCCAATCCCCGAATCTCGGTGGTATTTCTTCTGTCTCGCTACAGCAGCCCAACTCCTTACATTCCCCGTCTAGTCAACAAGCAATTCCAGGTGCTGCTAAAGATGCAGATAAAATTGAAGAACAACAACATCAGAGTTTTCCTGACGAGACAACAACTGAATCTACTAGCACAGGGATTGGCAAGAATCTCATAGTTGAAGATGATTTGAAATCAGCATATGCTGTAGAGTCACCTGTAGGTGTATCTGCCTCTCTTCCTGAAGCTGCTCAAATTTCCAGAGATATTGATTTGTCTCCTGGTCAACCTTTACAATCAAATCAATCTGCTGGCCACCTTGGTGTCATTGGAAGAAGAAATGGTGTTGACCTTGGAGCCATTGGTGATAGCTTTAGTGCATCAAGTGTTACTTCTGGTGGAGTGCGCGATCAACTGTATAATTTACAAATGCTTGAGGCTGCACATTTTAAAGTTCCTCTAGCTAAAGACTCAGAACGTCCTAGAACCTATACTCCTAGGCATCCAGCAATTACACCTCCTAGCTATCCACAAGTACAAGCGCCTATAGTTAACAACCCTGCCTTTTGGGAGAGATTAGGTCTTGAGGCATATGGCACTGACACCCTGTTCTTTGCATTTTATTATCAACAGAACACATACCAACAATATTTGGCTGCAAAGGAGCTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAATACATGGTTTCAGCGGCATGAAGAGCCCAAAGTTGCTACAGATGATTTTGAGCAGGGAACATATGTGTACTTTGATTTTCATATTGCAAATGATGACCTGCAACATGGATGGTGTCAAAGAATCAAGACTGAATTTACTTTCGAGTATAATTATCTTGAAGACGAGCTTCTTGTATAG 2703 0.4329 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSAAYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELESQIDNFEAELEGLTVKKGKNRPPRLTHLETSITRHKAHIKKCELVLRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFDDVDELYISLPLDKVDTLEDLVTIPTSVAVAKTISSLPLDEGKILEDLTIPTGLAKVAPGVSLKSPLAVSASQSASSQTSEQADETASQDSNSDIVAKTPPPKSSGISSSASTPTGNNATPAFANVSGHNLSSSPAAVVLPVSNSVRNVLENANVNQLASTKEEDINSFPSRRPSPSLSDAALVRGRNSLSNQATASIPLGSGNMVSGNGAFGSLPSASEITKRNILVADDRLGSSGMVQQPLVSPLSNRLILPQVGKANDGTASVDSSTVNEAAAVSGRVFSPSVVPGMQWRPGSPFPNQNDVGQLRGRTEIAPDQREKFLQKFQQVQQQGPSTLLNMPSLVAGNHKQFSSQQQSPLLQQFNSQGSSVSSQSSMGLGAQSPNLGGISSVSLQQPNSLHSPSSQQAIPGAAKDADKIEEQQHQSFPDETTTESTSTGIGKNLIVEDDLKSAYAVESPVGVSASLPEAAQISRDIDLSPGQPLQSNQSAGHLGVIGRRNGVDLGAIGDSFSASSVTSGGVRDQLYNLQMLEAAHFKVPLAKDSERPRTYTPRHPAITPPSYPQVQAPIVNNPAFWERLGLEAYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDDFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELLV 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03428 900 PANTHER CCR4 NOT-RELATED 24 897 IPR040168 GO:0030015
Vivi6g03428 900 FunFam CCR4-NOT transcription complex subunit 3 isoform X1 740 895 - -
Vivi6g03428 900 MobiDBLite consensus disorder prediction 295 344 - -
Vivi6g03428 900 Coils Coil 41 61 - -
Vivi6g03428 900 Coils Coil 132 159 - -
Vivi6g03428 900 Pfam NOT2 / NOT3 / NOT5 family 756 894 IPR007282 GO:0006355
Vivi6g03428 900 Gene3D - 740 895 IPR038635 -
Vivi6g03428 900 MobiDBLite consensus disorder prediction 570 630 - -
Vivi6g03428 900 MobiDBLite consensus disorder prediction 110 131 - -
Vivi6g03428 900 MobiDBLite consensus disorder prediction 570 661 - -
Vivi6g03428 900 PIRSF NOT_su_3_5 1 900 IPR012270 GO:0006355|GO:0030015
Vivi6g03428 900 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 235 IPR007207 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03428 Vivi-Chr6 126481218 126491984 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03428 K12580 - gmx:100783415 1361.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03428 6 126481218 126491984 Vivi6g03428 6 126481218 126491984 ECH