Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03381 ATGATCAGAATCAGATCTAACCTATCTGTTGTCTCTGTTGTGCTGTTACGCGTAAGGCAAATCCCAGTCAATGTCAATCACTGTGATATAGTTCAGAAGCCTCTTGTGAATGGTTTTTTCAATGATTTTGACTATTCAAGCAATGACACTTTTTTAGCTCCACCAAAATTTGGTTTCTTAGTTAGGTTCTTTTCTACTGAATCCTCAACCAAAAGCCTTGGAATATCCACTAATGTTCCTGCATTGGGATTGGACGAGGCCTTGAGTGATGAAGACGATAATGATAATGACGGAGACGATGATGATTGTGATAAGAATAGTACTCAGTTACATTTAATGGATGATGATTTTGTTCAAGATGTTAAGACTGTTATGGATATAATTCACGAACCGGGTTCTGGACCACATGAAATTAAGCACAAGCTTGAGATTTGCAGTGTTAAGGCATCGTCAGAGTTGGTTGTGGAGGTTCTTTCGAGAATTCGCAATGATTGGGAAGCAGCTTTCACTTTTTTCTTGTGGGCTGGGAAGCAACCAGAATACGCTCATTCGGTTCGCGAATACCATTCAATGATATCTGTCCTGGGTAAAATGAGGAGGTTTGATACTGCTTGGGCCTTAATAGAAGAAATGAGAGGGAAAAAAACTGGTAAATCTCTTGTCACTTCACAAACTCTCTTGATTATGATAAGGAAATACTGTGCTGTTCATGATGTTGGAAGGGCTATAAACGCTTTCTATGCTTTTAAACGGTTTAACATTCAAGTTGGATTGTATGAATTTCAAGGCCTTCTTTCTGCGCTTTGCCGATACAAGAATGTGCAAGACGCTGAGCACTTATTGTTCTGCAACAAAAATGTTTTCCCACCTGACACTAAAAGCTTTAACATCATTCTTAATGGATGGTGCAATTTGATCGTTAGCGCGCGCAATGCAGAAAGGATTTGGGAGGAAATGAGTAAGAGAGGAATCAAACACGATGTTGTCTCCTATGCAAGTATCATATCTTGCTATTCAAAGTCTTCTAAACTATATAGGGTGCTCCAGCTGTTTGAACAAATGAAGAAAAGGAATATCGCTCCGGATAGAAAGGTTTATAACGCAGTCATTTTTTCTCTTGCGAAGAATAGGCTTGTGAAAGAAGCTATAAATCTAATTGGAACAATGGAAAACAACAATGTTACTCCAGATGCCATTACTTACAACTCCCTGATCAAGCCTCTATGCAAAAACCGCAAAATTGATGAAGCAAAAGAGATTTTCGATGAGATGTTAAAGCGACGCATATCCCCTTCTATTCGGACTTTTCATGCTTTCTTCCGAATATTAAGAGTCAAAGAAGAAGTATTTGAGCTTTTGGGCAAAATGAAAGAGCATGGGTGCGACCGAACTATTGAAACTTATATAATGCTGATAAGAAAGTTTTGCCGGTGGCGCCAGCTTGATGAAGTCAAGAAGATATGGAATGCAATGAGGGAAGATGGAATCGGCCATGATCGTAGCTCATACATTGTACTGATTCATGGTCTGTTTCTGAATTGTAAGGTGGAGGAAGCATACAAATATTATATAGAGATGCAAGAGAAAGGTTTCCTTCCTGAACCAAAGACCGAAAGTATGCTTCAGGCATGGCTTTCGGGGAAACAAGTAACCGAGGGCCAGGTTGCAGATTTAGAATACAATCAGTTGGAACATGGCAGTCTCAAAAAGAATGTAAAACCTATACCAAGTAAATTTGATAGGGAAAAAGATTTTCTTCGTGATCCTGAGACTAGAAGCGTAACAAGAGAAGGAGGCTTTTCTTTCTGGGAGAAGTAA 1818 0.3922 MIRIRSNLSVVSVVLLRVRQIPVNVNHCDIVQKPLVNGFFNDFDYSSNDTFLAPPKFGFLVRFFSTESSTKSLGISTNVPALGLDEALSDEDDNDNDGDDDDCDKNSTQLHLMDDDFVQDVKTVMDIIHEPGSGPHEIKHKLEICSVKASSELVVEVLSRIRNDWEAAFTFFLWAGKQPEYAHSVREYHSMISVLGKMRRFDTAWALIEEMRGKKTGKSLVTSQTLLIMIRKYCAVHDVGRAINAFYAFKRFNIQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPPDTKSFNIILNGWCNLIVSARNAERIWEEMSKRGIKHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNIAPDRKVYNAVIFSLAKNRLVKEAINLIGTMENNNVTPDAITYNSLIKPLCKNRKIDEAKEIFDEMLKRRISPSIRTFHAFFRILRVKEEVFELLGKMKEHGCDRTIETYIMLIRKFCRWRQLDEVKKIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLPEPKTESMLQAWLSGKQVTEGQVADLEYNQLEHGSLKKNVKPIPSKFDREKDFLRDPETRSVTREGGFSFWEK 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03381 605 Gene3D Tetratricopeptide repeat domain 285 446 IPR011990 GO:0005515
Vivi6g03381 605 Gene3D Tetratricopeptide repeat domain 118 282 IPR011990 GO:0005515
Vivi6g03381 605 Pfam PPR repeat family 396 440 IPR002885 -
Vivi6g03381 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Vivi6g03381 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 326 IPR002885 -
Vivi6g03381 605 Pfam Pentatricopeptide repeat domain 314 370 IPR002885 -
Vivi6g03381 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vivi6g03381 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vivi6g03381 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Vivi6g03381 605 PANTHER ATPASE EXPRESSION PROTEIN 3 264 547 - -
Vivi6g03381 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vivi6g03381 605 Gene3D Tetratricopeptide repeat domain 447 561 IPR011990 GO:0005515
Vivi6g03381 605 Pfam PPR repeat 467 496 IPR002885 -
Vivi6g03381 605 Pfam PPR repeat 188 214 IPR002885 -
Vivi6g03381 605 Pfam PPR repeat 502 531 IPR002885 -
Vivi6g03381 605 NCBIfam pentatricopeptide repeat 399 432 IPR002885 -
Vivi6g03381 605 NCBIfam pentatricopeptide repeat 467 496 IPR002885 -
Vivi6g03381 605 NCBIfam pentatricopeptide repeat 329 362 IPR002885 -
Vivi6g03381 605 NCBIfam pentatricopeptide repeat 365 398 IPR002885 -
Vivi6g03381 605 NCBIfam pentatricopeptide repeat 502 533 IPR002885 -
Vivi6g03381 605 NCBIfam pentatricopeptide repeat 188 214 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03381 Vivi-Chr6 125624877 125627527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03381 104 574 Glycosyltransferase AT1G05670 20.668 3.89e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03381 - - gmx:100785546 873.618