Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03359 ATGGGCGCAACCACAGACCCAACCCTAGACCCCTCCGACGAGCAACAAAAACGCTCCGAAATCTACACCTACGAAGCCCCATGGCACATCTACGCCATGAACTGGAGCGTCCGCCGCGACAAAAAATACCGACTCGCCATCGCATCCCTCCTCGAACAATACCCTAACCGCGTCGAAATCGTCCAACTCGACGACACAAACGGCGAAATCAAATCCGATCCAAATCTCTCCTTCGAACACCCCTACCCTCCCACCAAAGCAATCTTCATCCCTGACAAAGACTGCCAACGCCCCGACCTCTTAGCCACCTCCAGCGACTTTCTCCGTATATGGCGAATCTCCGATTCCGACGAATCCCAGTCACGTGTCGAGCTCAAAAGCCTCCTTAACGGTAACAAAAATAGCGAGTATTGCGGTCCTATAACCTCCTTTGACTGGAACGAAGCGGAGCCGAGGCGAATCGGGACGTCGAGTATCGACACTACGTGTACGATTTGGGATATCGAGAAGGAAACTGTTGATACGCAGCTGATTGCGCATGATAAAGAGGTGTACGATATAGCTTGGGGTGGTGTTGGTGTTTTTGCTTCGGTTTCTGCTGATGGTTCGGTTAGGGTTTTTGATTTACGCGATAAGGAACATTCGACGATAATTTACGAGAGTTCTGAACCGGATACGCCGTTGGTGAGGCTTGGTTGGAATAAACAGGATCCTCGTTATATGGCTACGATTATTATGGATACTGCTAAGGTTGTTGTGCTTGATATTCGTTTTCCGACGTTACCGGTTGTGGAGTTGCAGAGACATCAAGCTAGTGTGAATGCGATTGCGTGGGCGCCGCATAGTTCTTGCCATATTTGTACTGCTGGGGATGATTCTCAGGCGTTGATTTGGGATCTTTCGTCCATGGGGCAACCGGTTGAAGGTGGGCTTGATCCGATTTTGGCTTATACTGCTGGGGCGGAAATTGAACAGCTTCAGTGGTCTTCTTCGCAGCCGGATTGGGTTGCTATTGCTTTCTCCACTAAGCTTCAGATTCTCAGGGTGTGA 1050 0.501 MGATTDPTLDPSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDTNGEIKSDPNLSFEHPYPPTKAIFIPDKDCQRPDLLATSSDFLRIWRISDSDESQSRVELKSLLNGNKNSEYCGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDTAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03359 349 FunFam WD repeat-containing protein LWD1 17 348 - -
Vivi6g03359 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 302 - -
Vivi6g03359 349 Pfam WD domain, G-beta repeat 266 299 IPR001680 GO:0005515
Vivi6g03359 349 Pfam WD domain, G-beta repeat 177 208 IPR001680 GO:0005515
Vivi6g03359 349 Gene3D - 17 348 IPR015943 GO:0005515
Vivi6g03359 349 PANTHER WD REPEAT CONTAINING PROTEIN 12 349 IPR045159 -
Vivi6g03359 349 SMART WD40_4 170 208 IPR001680 GO:0005515
Vivi6g03359 349 SMART WD40_4 71 112 IPR001680 GO:0005515
Vivi6g03359 349 SMART WD40_4 122 167 IPR001680 GO:0005515
Vivi6g03359 349 SMART WD40_4 259 299 IPR001680 GO:0005515
Vivi6g03359 349 SUPERFAMILY WD40 repeat-like 54 307 IPR036322 GO:0005515
Vivi6g03359 349 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Vivi6g03359 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 302 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03359 Vivi-Chr6 125261268 125262624 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03359 K11805 - qsa:O6P43_009788 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03359 6 125261268 125262624 Vivi6g03359 6 125261268 125262624 ECH