Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03333 ATGGCTTCTTTCCTCTCCACCCCTCAACCCATTCCCACACCCTTCCTCACCAAACTCACCTCTTCCCCAAAACCATGGAAGAACTTCTTCATCCTCAACCACCCTCTTCACCGCAAAACCTTCAAAAACCTACCACCCTTCCCACCTCTCAATGCAGTCCACACTCAACGACTCTATGCCCCTCCTCCCCCCTCCAAAATCGACCCTGAAAACGACCCTATTGCGGTCCTCAACGACAGGATTCGTCGCGAGTATAGCGAAAGGAAGGTTTCCAGGACGGTTATGGACGCTAAAGAAGCTGATAAGTATATACAAATGGTTAAGGAGCAACAGCAGAGGGGGCTTCAGAAGCTTAAGGGTGATAGAGAGGCTAAAGATGGTACCATTAGTTATAAGGTGGACCCTTATACTCTTCGGTCTGGGGACTATGTTGTGCATAAGAAAGTTGGTATTGGGAGGTTTGTTGGGATTAAATTGGATGTTTCGAAGAATTCGACTGAACATATTGAGTATGTTTTCATTGAGTATGCTGATGGAATGGCTAAGCTTCCTGCTAAACAAGCTTCTAAAATGCTATATAGATATTGTCTTCCAAATGAAAGCAAAAAGCCTAGGACATTGAGCAAGTTGAATGATATTAGTGCATGGGAGAAAAGAAAGATTAAAGGGAAGGTTGCCATACAGAAAATGGTTGTTGACTTGATGGAACTCTATCTGCATAGGCTTAGACAAAGAAGGCCTCCTTATCCCAGAAGTCCCGCTGTGGCTGAATTCGCAGCAAAATTTGCTTATGAACCTACGCCGGATCAGAAACAGGCTTTTATTGATGTTGAAAATGATTTGACAAAGCGAGAGACTCCAATGGACAGATTAATATGTGGAGATGTTGGTTTTGGTAAAACCGAGGTCGCGCTGCGTGCTATCCACTGTGTTATTGCAGCTAAAAAACAAGCAATGGTTCTTGCACCGACAATAGTTCTAGCAAAGCAACATTTTGATACTATTTCAGAGCGATTTTCTGTATATCCTGATATCAAAGTTGGACTACTAAGCAGGTTTCAGACCAAATCAGAGAAGGAAACGTACTTGGAAAGGATTAAGAATGGTGACCTAGATATTATTGTTGGAACTCACGCACTCCTTGGAAACCGTGTTGTTTATAGCAATCTTGGCCTGCTTGTGGTTGATGAGGAACAGAGGTTTGGTGTCAAACAGAAGGAGAGGATTGCTTCTTTTAAAACTTCCGTCGACGTACTTACTTTATCTGCAACTCCTATTCCACGGACTCTTTATTTAGCGCTGACAGGATTTCGTGATGCTAGTTTAATTTCAACTCCACCGCCAGAAAGAGTTCCTATAAAGACTCAACTTTCTTCATTCAGTAAGGAAAACGCAATATCAGCCATCAAGTATGAGCTGGACCGTGGTGGTCAAGTTTTTTATGTTCTTCCACGTATTAAAGGACTTGATGAAGCAATGGAGTTTCTTCAAGAGGCATTCCCCGATGTGGAAATAGCCGTTGCCCATGGGAAGCAATACTCGAAGCAATTAGAGGATACGATGGAGAAGTTTGCTCTAGGTGAAATAAAAATCCTTATCAGCACAAATATAGTTGAAAGTGGGCTTGATATTCAAAATGCAAACACTATCATCATTCAGGATGTTCAACAATTTGGTCTTGCGCAGTTGTATCAGTTGCGTGGAAGGGTTGGGCGAGCAGACAAGGAAGCATACGCATACTTATTTTATCCTGATAAGAAGCTGCTCTCTGAACAAGCATTGGAGAGACTTGTAGCCCTTGAAGAATGTCGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAGAGACATGGGTATAAGAGGTTTTGGTACTATTTTCGGGGAGCAACAAACAGGAGATATTGGAAATGTCGGCATTGATCTTTTCTTTGAGATGCTCTTTGAGAGTTTATCCAAGGTTGAAGATCACCGTGTTGTATCAGTTCCTTATCACTCAGTGCAGGTTGACTTAAATATCAATCCGCACCTTCCTTCTGAATACATAAATCATCTCGAGAACCCTATGGAAATAATAAACGAGGCCGAGCAAGTTGCTGAGAAAGACATCTGGAGTCTGATGCAATTTACCGAGAATTTGCGCCGCCAATATGGCAAAGAGCCTCAACCCATGGAGGTGATCTTAAAGATGCTTTATTTGAGGAGAATGGCAGCTGATATCGGGGTAACCAAAATTTACTCTTCAGGGAAGACAGTGTGTATGAAAACAAACATGACTAAAACGATTTTCAAGATGATGACAGAATCTATGACATCGGATCTATATAAAGATTCATTGGTTTTTGAAGGGAACCAAATTAAGGCTGAACTTCTACTAGAGCTACCGAAAGAACAACTTCTTAATTGGACCTTTAATTGCATGGCTGAACTTCATGCTTCACTAGCTTCCCTCATAAAGTACTAG 2460 0.4203 MASFLSTPQPIPTPFLTKLTSSPKPWKNFFILNHPLHRKTFKNLPPFPPLNAVHTQRLYAPPPPSKIDPENDPIAVLNDRIRREYSERKVSRTVMDAKEADKYIQMVKEQQQRGLQKLKGDREAKDGTISYKVDPYTLRSGDYVVHKKVGIGRFVGIKLDVSKNSTEHIEYVFIEYADGMAKLPAKQASKMLYRYCLPNESKKPRTLSKLNDISAWEKRKIKGKVAIQKMVVDLMELYLHRLRQRRPPYPRSPAVAEFAAKFAYEPTPDQKQAFIDVENDLTKRETPMDRLICGDVGFGKTEVALRAIHCVIAAKKQAMVLAPTIVLAKQHFDTISERFSVYPDIKVGLLSRFQTKSEKETYLERIKNGDLDIIVGTHALLGNRVVYSNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTQLSSFSKENAISAIKYELDRGGQVFYVLPRIKGLDEAMEFLQEAFPDVEIAVAHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAYAYLFYPDKKLLSEQALERLVALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDIGNVGIDLFFEMLFESLSKVEDHRVVSVPYHSVQVDLNINPHLPSEYINHLENPMEIINEAEQVAEKDIWSLMQFTENLRRQYGKEPQPMEVILKMLYLRRMAADIGVTKIYSSGKTVCMKTNMTKTIFKMMTESMTSDLYKDSLVFEGNQIKAELLLELPKEQLLNWTFNCMAELHASLASLIKY 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03333 819 SMART CarD_TRCF_2 137 239 IPR003711 -
Vivi6g03333 819 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 443 IPR014001 -
Vivi6g03333 819 SMART TRCF_a_2_a 669 767 IPR005118 GO:0006281
Vivi6g03333 819 Gene3D - 138 652 IPR027417 -
Vivi6g03333 819 Pfam DEAD/DEAH box helicase 288 426 IPR011545 GO:0003676|GO:0005524
Vivi6g03333 819 Gene3D - 665 813 IPR037235 -
Vivi6g03333 819 Pfam CarD-like/TRCF domain 138 238 IPR003711 -
Vivi6g03333 819 SUPERFAMILY TRCF domain-like 662 804 IPR037235 -
Vivi6g03333 819 Gene3D - 202 445 IPR027417 -
Vivi6g03333 819 SMART ultradead3 262 454 IPR014001 -
Vivi6g03333 819 Pfam Helicase conserved C-terminal domain 467 573 IPR001650 -
Vivi6g03333 819 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 465 618 IPR001650 -
Vivi6g03333 819 SMART helicmild6 490 574 IPR001650 -
Vivi6g03333 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 588 IPR027417 -
Vivi6g03333 819 CDD DEXHc_TRCF 252 445 - -
Vivi6g03333 819 Gene3D - 141 201 - -
Vivi6g03333 819 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 678 780 - -
Vivi6g03333 819 Pfam TRCF domain 670 756 IPR005118 GO:0006281
Vivi6g03333 819 SUPERFAMILY CarD-like 133 201 IPR036101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03333 Vivi-Chr6 124767155 124772246 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03333 - - tpra:123888714 1373.61