Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03328 ATGATCACTCAACCCTCAACATCAAAACCAACGTCTCTCTCCACCACCACCCTTCTTCCTCACTCACCACCTCCCACTCTTCAACCAAACAGCCCAAAACGAAAAAGAGAAATGTGCGAACCACCACAACAAATCACCACTCTTCATTCCCCTTCAACCCTTTTTCAAATTCACCCTACTACCCCTGAAAAATCCACTCGTTTCTCTCCTAATTCAAACCCTCTTAACAACAACTGCTTCAAATGTCACCAACCAGGTCACTGGGCTTCCGTTTGTCCCCTCAAATCCTCCACCAACACCAACAGTAAACCCCATTCCAATTCATCTGCTTCCAAACAGATACACTGCCGTTGCGGTCACGGTTTCTGTGACGTTAAAATGGCTCATAGTGATAAAAACAATGGGAGATACTACTTTCTATGTCCCATCAAAAGGGGTGCACGTTGTAGTACTTTTGTTAAGTGGTGTGATGATCCCATCAATGAGAGTGATTTGCAGCCTCCTTTGATTAAGTATCCTGCGTGTGAATGTGGAGCTGGAGTTTGTAGAAAAGTGATGGAAACAGAAGAGGGTTCTTGTAGGGTCAAATCCTATTTTGCTTGTCCCATTAAACAGAGTCATGGATCTTGTGGTTTCCGTGTGTGGGAAGATGAACTACTCAATACCGCAAGCATTGATGAACTCGTCAATAACACGGGCGTTGTTCCTATCCGACAGAGCAAGCAAAGATCTCTCAATGAATTGTTCAAGGGAGACCAAACTGATACTGATACAGCTGTTAACGACCCGCCTAATGATTTGGCTGATGGTAGTGATTTGTTATTAACGACTAAAAGGATGAGAATAACAGATAGTTCTGAGAATCCTTCACCTGTTTCTGGATCTGAGATTCTAGAGGGAAAAAGTGGGGAATCATCTATAGAGGAGGCAAGTTCACAATATGTTGGTTTTCCGGAAATTGAGTTCGAGGATGATCCAGAATCAATAAACTTAGCCTCGTGGGCGGCAATTGAGGCTGAAGCTTTTCTATCATCACGTATGACGACACCGTCACGGATCAGTTGTCGACAAAGTTTATTCCAAAGCGACATGTTGGCTGCTGATGCATCATTAGGTACTATCTTCATATGTGGAAATTATCTTGATCTTATTGCAGGTTCTTATCCAACGGGTTGGTTAGGTCGTCTTATTTTCTTTCATCCAACTCAAAATTTGAAATCCCCTCAACCCAAACCGTTTTTCTGCTGTATTTTTCCATCGCTCGATCCAATAGAAGTTCCTAAACAAACAAGTACTCTTAATAGCCAAAGTGAACGCAACGACCTTGCTATCAAGACTCCTAATCAATCTACCCAACTTTCAACAGATGTAGTGAGCCTCGACAGATCACAAGGAAGTGACAGCCAGCTAAAAGCACGAAGACAAAGAGAAGTCGCGTTATTTACACAACAGCGGCTTCTCAAAGATCTAGAGGATTTGGATTTTCACCAGCATGAATCTATGAGAGAGGCAGCGGAAGCCACTTTTTCTATGTTATACCTTTTAGGATTTGAGTGTAAACGATTTTCTGACTATGTATGGAACTTCATCAATCTTGCAACTTCTATGGCTGAAATTGACGAGTCCATGAAAAACTCGCCTACGTTGGAGGACCACATTAAATTCCTGGAGGAGGAGAAAGCTAGACAGGCTAACATCAAGGATGATTGTATGAAAACCGAGGCTTTACTCGGGTCATCCAATCAAAAGAGAAATCTGCTTCGCGAAGAAATTGCTCGTCTTGAGGCCATGGTCATTGAAAAACGAAACGAGTTGAAAATTTGCGAGTTGGAGACGGTGAATGTAGAGACTCAGCTTGACAATTTAAAAATAAGAATGTTAGAGGTTGACGTAACCGTAAAAGATAAAGTTCGACAAGCAGAAGCAGCAAGGAAACAAATTGCAGAGAAAGACAGAAAGCAAATTGAAGCCATGGCAGCATTGGAGAAGGCTAAACATGAATTGGTAAATTAG 2013 0.4218 MITQPSTSKPTSLSTTTLLPHSPPPTLQPNSPKRKREMCEPPQQITTLHSPSTLFQIHPTTPEKSTRFSPNSNPLNNNCFKCHQPGHWASVCPLKSSTNTNSKPHSNSSASKQIHCRCGHGFCDVKMAHSDKNNGRYYFLCPIKRGARCSTFVKWCDDPINESDLQPPLIKYPACECGAGVCRKVMETEEGSCRVKSYFACPIKQSHGSCGFRVWEDELLNTASIDELVNNTGVVPIRQSKQRSLNELFKGDQTDTDTAVNDPPNDLADGSDLLLTTKRMRITDSSENPSPVSGSEILEGKSGESSIEEASSQYVGFPEIEFEDDPESINLASWAAIEAEAFLSSRMTTPSRISCRQSLFQSDMLAADASLGTIFICGNYLDLIAGSYPTGWLGRLIFFHPTQNLKSPQPKPFFCCIFPSLDPIEVPKQTSTLNSQSERNDLAIKTPNQSTQLSTDVVSLDRSQGSDSQLKARRQREVALFTQQRLLKDLEDLDFHQHESMREAAEATFSMLYLLGFECKRFSDYVWNFINLATSMAEIDESMKNSPTLEDHIKFLEEEKARQANIKDDCMKTEALLGSSNQKRNLLREEIARLEAMVIEKRNELKICELETVNVETQLDNLKIRMLEVDVTVKDKVRQAEAARKQIAEKDRKQIEAMAALEKAKHELVN 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03328 670 Pfam GRF zinc finger 115 158 IPR010666 GO:0008270
Vivi6g03328 670 ProSiteProfiles Zinc finger CCHC-type profile. 79 93 IPR001878 GO:0003676|GO:0008270
Vivi6g03328 670 MobiDBLite consensus disorder prediction 443 469 - -
Vivi6g03328 670 SUPERFAMILY Retrovirus zinc finger-like domains 61 97 IPR036875 GO:0003676|GO:0008270
Vivi6g03328 670 ProSiteProfiles Zinc finger GRF-type profile. 116 159 IPR010666 GO:0008270
Vivi6g03328 670 PANTHER OS07G0190500 PROTEIN 167 622 - -
Vivi6g03328 670 Coils Coil 633 653 - -
Vivi6g03328 670 MobiDBLite consensus disorder prediction 443 466 - -
Vivi6g03328 670 MobiDBLite consensus disorder prediction 43 70 - -
Vivi6g03328 670 MobiDBLite consensus disorder prediction 281 295 - -
Vivi6g03328 670 MobiDBLite consensus disorder prediction 1 21 - -
Vivi6g03328 670 Coils Coil 577 611 - -
Vivi6g03328 670 MobiDBLite consensus disorder prediction 1 70 - -
Vivi6g03328 670 Gene3D - 71 115 - -
Vivi6g03328 670 MobiDBLite consensus disorder prediction 281 303 - -
Vivi6g03328 670 ProSiteProfiles Zinc finger GRF-type profile. 175 219 IPR010666 GO:0008270
Vivi6g03328 670 SMART c2hcfinal6 78 94 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03328 Vivi-Chr6 124740336 124743074 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03328 - - vvo:131612285 1320.45