Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03270 ATGAATTATTTTCCAGACGAGGTTATAGAACATGTGTTTGACTATGTGGTGTCACATAGTGACAGAAACAGTTTGTCTTTGGTATGCAAAAGTTGGTATAGAATAGAAGGGTTTACAAGGAAAAGGGTGTTCATAGGAAACTGTTACTCTATTAGTCCTGAGAGGTTGGTGGAGAGGTTTCCTGAACTCAAGTCTTTAACTTTAAAGGGAAAACCTCATTTTGCTGACTTCAGTTTGGTTCCTCATGGTTGGGGTGGTTTTGTTTATCCATGGATTGAAGCACTTGCTAAGAGTAGAGTTGGGTTGGAGGAGCTTAGGTTGAAGAGGATGGTTGTGTCAGATGAGAGCCTGGAGCTACTTTCGCGTTCTTTCATGAATTTCAAGTCTTTGGTGCTTGTTAGCTGTGAAGGGTTCACCACTGATGGACTTGCTGCTGTTGCTGCAAATTGCAGGTCTCTTAGGGAGCTAGATCTGCAAGAGAATGAAGTTGATGATCACAAAGGACAGTGGCTAAGTTGTTTTCCGGAAAACTGTACATCGCTCGTTGCTCTTAATTTTGCTTGCCTTAAAGGAGAGATTAATGTGGGAGCACTTGAGAGACTTGTGGCAAGATCGCCTAACCTCAAGAGTCTAAGGTTAAACCGTTCTGTGCCTGCTGATGCACTTCAAAGGATACTGATGCGAGCGCCTCAACTAGCAGATTTGGGTATTGGATCATTTGTTCATGATCTCAATTCAGAGGCCTACATAAAGCTTAAGAATACCATTCTTAAGTGCAGGTCAATAACGAGTTTGTCCGGGTTTTTGGAAGTGGCTCATTTTAGCCTTGCTGCCGTGTATCCAATTTGCCGGAACTTAACTTCCTTGAACTTGAGCTATGCAGCAAGCATTCAGGGCACTGAGCTGATTAAACTCATTCGCCACTGCGTGAAACTACAGCGCTTATGGATAATGGATTGCATTGGAGACAAAGGACTAGTTGCTGTAGCTACTACATGTAAAGAGTTGCAAGAATTGAGGGTTTTTCCATCCGCGCCATTTGGAAATCAAGCAGCTGTTACCGAAGTAGGACTTGTAGCGATATCAAAGGGATGCCCTAAGCTTCACTCGTTACTCTACTTCTGCCACCAGATGACAAATGCCGCTCTCATAACAGTGGCCAAGAACTGTCCAAATTTTATCCGTTTCAGGTTATGCATCCTCGATGCAACAAAGGCTGACTCCGACACAATGCAGCCACTGGATGAAGGTTTTGGGGCAATCGTTCAGTCATGCAAACGACTGAGGCGGCTATCACTCTCCGGCCAGTTGACTGACCAGGTCTTTCTTTACATAGGAATGTACGCGGAGCAGCTTGAAATGTTATCTATTGCATTTGCTGGCGAGAGTGACAAGGGAATGCTCTATGTATTAAACGGATGCAAAAAGCTTCGCAAGCTTGAGATAAGAGACTGCCCTTTCGGCGACACAGCGCTTCTAACAGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAGGTGACTGTAGGAGCATGCAAGACATTGGCTAAGAAGATGCCGAGTTTGAACGTGGAGATCTTCAACGAAAGTGAACAAGCAGATTGTTATGTGGAAGATGGACAACGGGTGGAGAAGATGTATTTGTATCGTTCCGTGGCTGGGAAAAGGGAAGATGCACCAGAATATGTATGGACTCTGTAG 1716 0.4452 MNYFPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIEGFTRKRVFIGNCYSISPERLVERFPELKSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKSRVGLEELRLKRMVVSDESLELLSRSFMNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVDDHKGQWLSCFPENCTSLVALNFACLKGEINVGALERLVARSPNLKSLRLNRSVPADALQRILMRAPQLADLGIGSFVHDLNSEAYIKLKNTILKCRSITSLSGFLEVAHFSLAAVYPICRNLTSLNLSYAASIQGTELIKLIRHCVKLQRLWIMDCIGDKGLVAVATTCKELQELRVFPSAPFGNQAAVTEVGLVAISKGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKADSDTMQPLDEGFGAIVQSCKRLRRLSLSGQLTDQVFLYIGMYAEQLEMLSIAFAGESDKGMLYVLNGCKKLRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSCEVTVGACKTLAKKMPSLNVEIFNESEQADCYVEDGQRVEKMYLYRSVAGKREDAPEYVWTL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03270 571 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 4 68 - -
Vivi6g03270 571 SMART fbox_2 4 45 IPR001810 GO:0005515
Vivi6g03270 571 SMART LRR_CC_2 309 332 IPR006553 -
Vivi6g03270 571 SMART LRR_CC_2 99 123 IPR006553 -
Vivi6g03270 571 SMART LRR_CC_2 365 389 IPR006553 -
Vivi6g03270 571 SMART LRR_CC_2 124 149 IPR006553 -
Vivi6g03270 571 SMART LRR_CC_2 333 364 IPR006553 -
Vivi6g03270 571 SMART LRR_CC_2 283 308 IPR006553 -
Vivi6g03270 571 SMART LRR_CC_2 425 448 IPR006553 -
Vivi6g03270 571 SMART LRR_CC_2 474 499 IPR006553 -
Vivi6g03270 571 Gene3D Ribonuclease Inhibitor 41 571 IPR032675 -
Vivi6g03270 571 CDD F-box_AtTIR1-like 1 40 - -
Vivi6g03270 571 Gene3D - 1 40 - -
Vivi6g03270 571 FunFam Transport inhibitor response 1 41 571 - -
Vivi6g03270 571 Pfam F-box 2 42 IPR041567 -
Vivi6g03270 571 FunFam Transport inhibitor response 1 1 40 - -
Vivi6g03270 571 SUPERFAMILY RNI-like 15 530 - -
Vivi6g03270 571 Pfam Leucine Rich repeat 149 165 IPR001611 GO:0005515
Vivi6g03270 571 Pfam Transport inhibitor response 1 protein domain 61 107 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03270 Vivi-Chr6 123343333 123346540 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03270 - - gmx:100812516 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03270 6 123343333 123346540 Vivi6g03270 6 123343333 123346540 ECH