Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03013 ATGGAGGTTGTTTCTCAGCCTCTCTGCTGCCACACCATCGTAACCACCAAAACCTATAGGTCTTACAAACAGCCATACTTTCCCTCTTCTTCGCTACATTTTCCCCTCCTGTCTTTCGGCACCACAACCCTCTCCCGCCGTCCGTCTCATTTTGCTCCACCATCAGTTCTGTTTGCAACGGCGCCGGGGAATCAATTGAGCATCGGAGAAGAAGGGGATGATACTCATACAAGTGATTCCGCACTTCAAGATTTTTATACCCTAAGGAAGGATGTTGAAATTGCGTCACAGCGTGTGAAAGAGATTCGAGAATCATCTGGGTTACAACTATTGGAGCAAGAAGCTGCCAACTTGGAAAAGGAGGCATCTTGTAGCTCCTTTTGGGACGATCGAGCCAAAGCTCAACAGACTCTTTCGACCCTGGCTGATGTCAAAGATAAGATTAAATTGCTCAATGACTACAAATCTCAGGTTGAGGATGCAGAAACAATAGTTATGTTAACAGAGGAAATGGAATCCGTTGATAGAGGGCTTTATGAGGAAGCTTCTAGTCTCATTAAAGAACTGAATAAGTCAGTTGATCAGTTTGAGCTGACTCAACTTCTTTCTGGTCCTTACGATAAAGAAGGTGCTGTTATCACTGTCACAGCAGGTGCTGGAGGTACCGATGCACAGGACTGGGCCGACATGCTTCTTAGGATGTATGTGAGATGGGGTGAGAAACATCGATACAAAACCAGAGTGGTTGAGAAATCTCTTGGAGATGAAGCTGGAATAAAATCTGCCACCATCGAAGTTGAAGGTCGTTATGCGTATGGGTATTTGTCTGGGGAGAAAGGGACACATCGCATTGTTCGGCAATCCCCTTTTAATTCCAAAGGTCTTCGTCAGACAAGCTTCTCTGGTATTGAAATCATGCCCCTTCTTCCTGAAGAATCTCTGAATGTTGAAATTCCCGAAGAGGATCTAGAGATTAGTTTTTCGAGAGCAGGTGGAAGTGGAGGTCAGAATGTTAACAAGGTTGAAACTGCCGTTCGGATTACACATATTCCAACTGGTGTCTCTCTTCGCTGCACAGAGGAAAGATCCCAACTAGCAAATAAGGTAAAAGCTTTAAGCCGTTTGAAAGCCAAGCTGTTGGTGATAGCTGAAGAGCAACGTGCAACTGAATTTAAACAGATTCGAGGGGATGTAGTGAAGGCTGAATGGGGACAACAAATAAGAAATTATGTCTTCCATCCATACAAACTAGTAAAGGATGTAAGAACAGGACATGAAACGCCAGATATCACCTCTGTTATGGATGGGGAGTTGGATCCCTTTATCAAATCATACCTTAAACACAAGTATAGTATGGCATTGTCTACAAGTGGGGTCAACTAA 1383 0.4403 MEVVSQPLCCHTIVTTKTYRSYKQPYFPSSSLHFPLLSFGTTTLSRRPSHFAPPSVLFATAPGNQLSIGEEGDDTHTSDSALQDFYTLRKDVEIASQRVKEIRESSGLQLLEQEAANLEKEASCSSFWDDRAKAQQTLSTLADVKDKIKLLNDYKSQVEDAETIVMLTEEMESVDRGLYEEASSLIKELNKSVDQFELTQLLSGPYDKEGAVITVTAGAGGTDAQDWADMLLRMYVRWGEKHRYKTRVVEKSLGDEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGIEIMPLLPEESLNVEIPEEDLEISFSRAGGSGGQNVNKVETAVRITHIPTGVSLRCTEERSQLANKVKALSRLKAKLLVIAEEQRATEFKQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTGHETPDITSVMDGELDPFIKSYLKHKYSMALSTSGVN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03013 460 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 329 345 IPR000352 GO:0003747|GO:0006415
Vivi6g03013 460 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 82 450 - -
Vivi6g03013 460 Gene3D - 309 405 - -
Vivi6g03013 460 Gene3D - 213 443 - -
Vivi6g03013 460 NCBIfam peptide chain release factor 2 95 447 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vivi6g03013 460 Gene3D Release factor 91 206 - -
Vivi6g03013 460 Pfam RF-1 domain 314 422 IPR000352 GO:0003747|GO:0006415
Vivi6g03013 460 SUPERFAMILY Release factor 111 451 IPR045853 -
Vivi6g03013 460 Hamap Peptide chain release factor 2 [prfB]. 84 450 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vivi6g03013 460 Pfam PCRF domain 111 302 IPR005139 GO:0006415
Vivi6g03013 460 Coils Coil 179 199 - -
Vivi6g03013 460 SMART PCRF_a_2 166 278 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03013 Vivi-Chr6 117505275 117508050 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03013 K02836 - gmx:100775574 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03013 6 117505275 117508050 Vivi6g03013 6 117505275 117508050 ECH