Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03008 ATGGCGGAAAATGCTTCAACTGAACTCAAGATGTTTCTGTTATTCTGTTTGTTGCTTATACAAGTTTCCCTCTCAGAAATCATTTTTGAAGAACGATTCGAAGATGGATGGCAAAGCCGGTGGGTAAAATCGGACTGGAAAAGAAGCGAAGGCAAAGCCGGTTCGTTCAAGCATACGGCTGGGACATGGGCTGGAGATCCCGATGATAAAGGTATCCAAACATCTAATGATGCAAAGCACTTTGCCATCTCTGCTAAGATACCGGAATTCACCAACAAAAACCGAACGCTGGTTTTTCAGTACTCTATAAAATTCGAACAAGAGATTGAGTGTGGTGGAGGTTACTTGAAACTTCTCTCTGGATTTGTTAATCAAAAGAAGTTCGGCGGGGATACACCTTATAGTGTAATGTTTGGACCAGATTTATGTGGCACGGACACGAAGAAGCTCCATGTCATAGTCTCGTACCAAGGTCAAAATTACCCGATAAAGAAGGACCTGCAGTGTGAAACAGATAAGTTAACTCATTTCTACACATTCATCCTCCGGCCAGATGCTACTTACAGTGTCCTGGTTGATAATCGAGAGAGAGATTCCGGTAGCATGTATACAGATTGGGATATTCTCCCTCCACGAAAAATCAAAGATGTCAAGGCAAAAAAGCCTGCAGACTGGGATGACAGAGAATACATTGAAGACCCTAATTCGGTCAAACCCGAGGGATATGATTCAATCCCAGCAGAAATTCCTGACCCGAAGGCTAAAGAGCCGGATAGTTGGGATGAAGACGATGATGGAATATGGAAAAGGCCGAAAATACCAAATCCAGCATACAAAGGACCATGGAAACGAAAGAAAATCAAGAATCCTAACTACAAAGGGAAATGGAAAACTCCATGGTTAGATAATCCAGAGTTTGAAGATGACCCCGACCTTTACGTGCTTAAGCCTATCAAATATGTCGGCATTGAGGTTTGGCAGGTTAAAGGTGGTTCGGTATTTGACAACATTTTGATTTGTGATGATCCTGATTATGCAAAACAAGTTGTTGATGAAGTGTTTGCCAACAGAGAGATTGAAAAGGAGGGTCTTGAGGAAGCAGAGAAAATAAAGAAAGCCCAAGAGGAGGAGGAGGCTCAAAGAGCAAGGGAAGAAGGTGAAAGGAGGAGAAGAGATAGAGGTCATGATCGACACCGAAACAGACATAGAGACAGATATAGAAAGCATCGCCGTGATTACATGGATGATTATCATGATGAGCTTTGA 1266 0.425 MAENASTELKMFLLFCLLLIQVSLSEIIFEERFEDGWQSRWVKSDWKRSEGKAGSFKHTAGTWAGDPDDKGIQTSNDAKHFAISAKIPEFTNKNRTLVFQYSIKFEQEIECGGGYLKLLSGFVNQKKFGGDTPYSVMFGPDLCGTDTKKLHVIVSYQGQNYPIKKDLQCETDKLTHFYTFILRPDATYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNSVKPEGYDSIPAEIPDPKAKEPDSWDEDDDGIWKRPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWLDNPEFEDDPDLYVLKPIKYVGIEVWQVKGGSVFDNILICDDPDYAKQVVDEVFANREIEKEGLEEAEKIKKAQEEEEAQRAREEGERRRRDRGHDRHRNRHRDRYRKHRRDYMDDYHDEL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03008 421 Gene3D - 26 385 - -
Vivi6g03008 421 MobiDBLite consensus disorder prediction 393 408 - -
Vivi6g03008 421 FunFam Calreticulin 211 312 - -
Vivi6g03008 421 ProSitePatterns Calreticulin family signature 2. 136 144 IPR018124 GO:0005509
Vivi6g03008 421 Pfam Calreticulin family 30 264 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi6g03008 421 Pfam Calreticulin family 266 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi6g03008 421 PRINTS Calreticulin signature 132 148 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi6g03008 421 PRINTS Calreticulin signature 221 234 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi6g03008 421 PRINTS Calreticulin signature 249 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi6g03008 421 PRINTS Calreticulin signature 287 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi6g03008 421 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi6g03008 421 PRINTS Calreticulin signature 320 340 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi6g03008 421 MobiDBLite consensus disorder prediction 249 270 - -
Vivi6g03008 421 FunFam Calreticulin 1b 26 211 - -
Vivi6g03008 421 Coils Coil 356 392 - -
Vivi6g03008 421 SUPERFAMILY P-domain of calnexin/calreticulin 207 322 IPR009033 GO:0005509|GO:0005515
Vivi6g03008 421 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Vivi6g03008 421 MobiDBLite consensus disorder prediction 225 271 - -
Vivi6g03008 421 MobiDBLite consensus disorder prediction 364 392 - -
Vivi6g03008 421 PANTHER CALRETICULIN AND CALNEXIN 9 385 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi6g03008 421 PIRSF Calreticulin 5 414 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vivi6g03008 421 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 224 IPR013320 -
Vivi6g03008 421 Gene3D Calreticulin/calnexin, P domain 211 312 IPR009033 GO:0005509|GO:0005515
Vivi6g03008 421 MobiDBLite consensus disorder prediction 364 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03008 Vivi-Chr6 117451554 117454945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03008 10 342 Miscellaneous Gene Families AT5G61790 34.343 8.47e-61 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03008 K08057 - gmx:100801827 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03008 6 117451554 117454945 Vivi6g03008 6 117451554 117454945 ECH