Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00307 ATGAGTACCGTGTTTGAGGGATATGAACGCCAATACTGCGAGCTTTCTGCTAATCTGTTGAAAATTTGCACTGCAGCTGGTGCTCTTAATGGAGAGCAAAAGAAGCAAAAACTTTCAGAAATAAAGGGTGGAATTGATGAAGCAGAAGCTTTGATACGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCAAACATTAAGGGTGGGCTTCTTGCTAAGTTGCGGGAATACAAATCAGATCTGAACAATATTAAAAGCGAACTTAAGAAACTCGTATCTGGAAACTTGAACCCCTCTGCACGGGATAGTTTGTTAGAATCAGGCATGGCAGATGCTTTGACGGTATCAGCTGATCAAAGAGACAGATTAATGTTTTCAACTGAGAGGTTGAACAAGTCTGGTGACAGAATTAAGGACAGTAGAAGAACAATGTTGGAAACAGAGGAGCTTGGAGTGTCAATCCTTTCAGATTTGCATTCTCAGCGACAATCTTTACTGCACGCACATGACACACTTCATGGAGTGGACGATAACATAGGCAAGAGCAAGAAAATTTTGTCGAACATGTCTAAGAGGATGAACAAGAACAAGTGTCTTATTAGCACCATTGTTGTGGTCCTGGTTCTTATTATCGGCGTGATTCTGTACTTTAAACTTTCAAAATATTTTAATCATTCAAAATAG 684 0.3991 MSTVFEGYERQYCELSANLLKICTAAGALNGEQKKQKLSEIKGGIDEAEALIRKMDLEARSLQPNIKGGLLAKLREYKSDLNNIKSELKKLVSGNLNPSARDSLLESGMADALTVSADQRDRLMFSTERLNKSGDRIKDSRRTMLETEELGVSILSDLHSQRQSLLHAHDTLHGVDDNIGKSKKILSNMSKRMNKNKCLISTIVVVLVLIIGVILYFKLSKYFNHSK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00307 227 SUPERFAMILY t-snare proteins 6 93 IPR010989 GO:0016020|GO:0016192
Vivi6g00307 227 FunFam Vesicle transport through interaction with t-SNAREsB 117 197 - -
Vivi6g00307 227 Gene3D - 117 197 - -
Vivi6g00307 227 CDD SNARE_Vti1 127 188 - -
Vivi6g00307 227 SMART tSNARE_6 122 189 IPR000727 -
Vivi6g00307 227 FunFam Vesicle transport through interaction with t-SNAREs homolog 1A 1 99 - -
Vivi6g00307 227 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 29 216 - -
Vivi6g00307 227 SUPERFAMILY SNARE fusion complex 130 189 - -
Vivi6g00307 227 Coils Coil 74 94 - -
Vivi6g00307 227 Gene3D - 1 96 IPR038407 -
Vivi6g00307 227 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
Vivi6g00307 227 PIRSF Membrin-2 1 218 IPR027027 GO:0005484|GO:0005794|GO:0016192
Vivi6g00307 227 Pfam Snare region anchored in the vesicle membrane C-terminus 128 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00307 Vivi-Chr6 7853121 7856924 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00307 K08493 - gmx:100815385 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00307 6 7853121 7856924 Vivi6g00307 6 7853121 7856924 ECH