Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00263 ATGTATCCCGGTGGTTATACTGCTGAAATTACAAACCTATCTCCAAGAGCTACTGAGAATGATGTGCAAAATTTTTTTGGCTACTGTGGTGAGATTGAGCGTGTTGACGTGATAAGACACAGTGATTTTGATTCTACTGCATATGTGACTTTTAAGGAAGCTTATGCCCTGGGAACTGCATTATTGCTTAATGGTTCGATGATTTTGGACCAAAGCATTTCCATTTCGCGCTGGGAAGCTTATACGGATGACAATAATTGGAACAGGCATAACGTTGAAGATAGTATTACATGCTCTCAAGATGTTCACATGGATAAGTTTGTTTCTTCCCCTGGAGAAGCTTTTACTATGGCCCAAGAAGTTGTCAAAACAATGGTAGCAAAAGGATATGTACTGAGCAAAGACGCATTCGTGATGGCAAAAGCTTTCGATGAATCGTGCAGTGTATCATCTACTGCATCAGCCAAAGTCGTTGAAATCAGCAACAAAATTGGACTGACAGAAACCATAAATTCAGGTATTGAAACTTTCAAATCTGTTGACGAGAAGTATCATGTTACAGATATCACCAAATCGGCCGCAGCGGTTACGGGAACGACAGCTATAGTCGTGGCAACAGTTACCGGAAGAGCTGCTGTGGCTGCTAGTACTGCTATTGTCAATAGCAGCTACTTCGCGAAAGGAGCTCTTTGGGTTTCGGATATGTTATCTCGTGCGGCGAAATCAGCCGCGGAATTGGGTCAGCATCAGAACAAATGA 759 0.4242 MYPGGYTAEITNLSPRATENDVQNFFGYCGEIERVDVIRHSDFDSTAYVTFKEAYALGTALLLNGSMILDQSISISRWEAYTDDNNWNRHNVEDSITCSQDVHMDKFVSSPGEAFTMAQEVVKTMVAKGYVLSKDAFVMAKAFDESCSVSSTASAKVVEISNKIGLTETINSGIETFKSVDEKYHVTDITKSAAAVTGTTAIVVATVTGRAAVAASTAIVNSSYFAKGALWVSDMLSRAAKSAAELGQHQNK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00263 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Vivi6g00263 252 SUPERFAMILY RNA-binding domain, RBD 5 85 IPR035979 GO:0003676
Vivi6g00263 252 Gene3D - 3 87 IPR012677 -
Vivi6g00263 252 SMART rrm1_1 7 76 IPR000504 GO:0003723
Vivi6g00263 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 73 IPR000504 GO:0003723
Vivi6g00263 252 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 6 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00263 Vivi-Chr6 5995081 5999615 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00263 - - psat:127128539 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00263 6 5995081 5999615 Vivi6g00263 6 5995081 5999615 ECH