Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06547 ATGGGGAGCCCTGGGTTGAGTAACCGCAATAGCGGGCAGCAGAAGTGGTTAGGGATTACAGAACCCATCTCATTGATTGGACCGACCAAATATGATATCGTCAAAACCTGTGAACTCGAGAAGTACTTGCAAGACGCCGGCTTGTATGAGAATAAGGAGGAAGCAGTTTGCAGGGAGGAAGTGCTTGGCAGGCTAGACCAGATTGTGAAGATTTGGGTCAAAACCATTACGCGAGCAAAGGGATTTAACGAACAAGTGGTGCAAGAAGCAAATGCCAAGATTTTTACTTTTGGCTCCTATCGTCTGGGGGTGCATGGCTCTGGAGCAGATATTGATGTTCTTTGTGTGGGACCTAGATATGCAACCAGAAATGAAGATTTCTTTGGGGTGCTACACAAAATGCTATCTAAGATGCCAGAAGTGACAGAGTTGCACCCAGTGCCTGATGCTTATGTTCCAGTGATGGGTTTCAAGTTCAACGGTGTCTCTATGGACCTCCTTTATGCAAATTTATCTTTGTGGGTTATTCCTGAAGACTTGGATTTATCACAGGAATCGATATTACAAAATACAGATGAACAATCTGTTCGCAGTCTTAATGGATGTAGAGTGACTGATCAAATCTTGAATTTGGTTCCAAATGTTCAGAACTTTCGTACAACATTGAGATGCATGAAGTTATGGGCTAAGCGCCGTGGCATTTATTCTAATGTTGCAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGTTGCTCGAATATGCCAGCTATATCCGAATGCGCTGCCTAATATGTCGGTGCCTCGATTCTTTAGGATATATACAGAATGGCATTGGCCAAACCCAGTAATGCTTTGTGAAATTAGATATGGATGTCTTGGACTTAGAATTTGGGATCCTAGACGACACCGGGAGGATAGGAACCATCTAATGCCAATAATTACTCCCGCTTATCCTTGCATGAATTCTAGCTTTAATGTGTCGTCAAGTACATTGCGTATCATGACGGAGGAGTTTCAACGGGGACATGAAATTTGTGAGGATATGGAGGCTAAGAAAGCTGATTGGGATACTCTTTTTGAGAATTATCCATTTTTTGAAGCTTATAAGAATTATTTGCAGATAGGCATTTCAGCGAAGAATCCTGATGATCTTAGAAACTGGAAAGGCTGGGTTAACTCCCGCTTGCGCCTGTTGAGATTGATGATTGAGGGGAGCACTAATGGCATCCTTCAGTGTCATCCACATCCTGAGGATTTTTCAGACAAATCTAGACCTCTGCACCGTTCTTACTTCATGGGTGTGCAACATAAGCAAGAAGTTCCTGCCAAAGAAGGCGAACTATTTGATATAAGACAAACCCTTGATGAATTTAAGCATTCTGTCAATAACTACACTCAACGGAAACATGGAATGGATATATTTATCACGCATGTGAAACGCCGCAATATACCTGTCTTTGTATTTCCAGGTGGTGTTCGGCCTAACTGCCCATCCAGGGTAACCAGGGTGAGTAATCGAAGTTCAGAGCTTAGAATTTCCGGCCATGGTCAAGCAGAGTTAGGAGATAACAATGATAGGAAGAGAAAGCAAGCAGAAGATAGTGTGGACGCGTTGAGAATTTCCAAGTCCTTTTCAGGGGAGTATCCTTCTGGGAACAGAAACTCCGGTAAGGAGAAAAGCATCTCAGAAATTAACCCTCTACTTACTACTACGGGTGCATCCAGTTCTAAACAAGCAGAAAAGCTCGGTATCGAAAATATTACGCGTGGTCCATATGATGCACATCAAGTCTTTTCAGAAGAACCTGATGAGCTTGAAAATGATCTTGAGTACAGAAATAAAGACAAAGATTTTGGCGGGAATATGAAAAACATCAGTTTGAACTCTCCATACTCAGAGTCTAAAGTGGCAGCAGAACCAGTTTTTTCTCAAAAGGAAAATAGTAGTTCAACTCATATATACTCCAATGAGAGCTTGGAGGAGCTTGAGCCTGCTGAGCTAACACCGCCATTGTCAAGTGGGAATTATGCACCGGTGCCACAACGGAAGTCAATATTTAGGTTCACCACATTAGGCAAATCTGCTGACAAAGGTTCCTAA 2103 0.4261 MGSPGLSNRNSGQQKWLGITEPISLIGPTKYDIVKTCELEKYLQDAGLYENKEEAVCREEVLGRLDQIVKIWVKTITRAKGFNEQVVQEANAKIFTFGSYRLGVHGSGADIDVLCVGPRYATRNEDFFGVLHKMLSKMPEVTELHPVPDAYVPVMGFKFNGVSMDLLYANLSLWVIPEDLDLSQESILQNTDEQSVRSLNGCRVTDQILNLVPNVQNFRTTLRCMKLWAKRRGIYSNVAGFLGGINWALLVARICQLYPNALPNMSVPRFFRIYTEWHWPNPVMLCEIRYGCLGLRIWDPRRHREDRNHLMPIITPAYPCMNSSFNVSSSTLRIMTEEFQRGHEICEDMEAKKADWDTLFENYPFFEAYKNYLQIGISAKNPDDLRNWKGWVNSRLRLLRLMIEGSTNGILQCHPHPEDFSDKSRPLHRSYFMGVQHKQEVPAKEGELFDIRQTLDEFKHSVNNYTQRKHGMDIFITHVKRRNIPVFVFPGGVRPNCPSRVTRVSNRSSELRISGHGQAELGDNNDRKRKQAEDSVDALRISKSFSGEYPSGNRNSGKEKSISEINPLLTTTGASSSKQAEKLGIENITRGPYDAHQVFSEEPDELENDLEYRNKDKDFGGNMKNISLNSPYSESKVAAEPVFSQKENSSSTHIYSNESLEELEPAELTPPLSSGNYAPVPQRKSIFRFTTLGKSADKGS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06547 700 FunFam Poly(A) polymerase alpha, putative 50 206 - -
Vivi5g06547 700 Pfam Nucleotidyltransferase domain 82 164 IPR002934 GO:0016779
Vivi5g06547 700 Pfam Poly(A) polymerase central domain 18 361 IPR007012 GO:0043631|GO:1990817
Vivi5g06547 700 FunFam Putative poly(A) polymerase gamma 177 360 - -
Vivi5g06547 700 MobiDBLite consensus disorder prediction 499 513 - -
Vivi5g06547 700 MobiDBLite consensus disorder prediction 639 680 - -
Vivi5g06547 700 MobiDBLite consensus disorder prediction 499 562 - -
Vivi5g06547 700 Gene3D - 18 360 - -
Vivi5g06547 700 PANTHER POLY A POLYMERASE 11 535 - -
Vivi5g06547 700 MobiDBLite consensus disorder prediction 642 658 - -
Vivi5g06547 700 Pfam Poly(A) polymerase predicted RNA binding domain 365 425 IPR007010 GO:0003723|GO:0043631
Vivi5g06547 700 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 362 - -
Vivi5g06547 700 MobiDBLite consensus disorder prediction 546 562 - -
Vivi5g06547 700 CDD NT_PAP_TUTase 58 212 - -
Vivi5g06547 700 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
Vivi5g06547 700 Gene3D Poly(A) polymerase predicted RNA binding domain 364 479 - -
Vivi5g06547 700 SUPERFAMILY Nucleotidyltransferase 18 209 IPR043519 -
Vivi5g06547 700 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 489 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vivi5g06547 700 MobiDBLite consensus disorder prediction 521 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06547 Vivi-Chr5 172306008 172311087 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06547 K14376 - gmx:100816915 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06547 5 172306008 172311087 Vivi5g06547 5 172306008 172311087 ECH