Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06483 ATGGCAGTAAGGAATGATTACAAGTTACTCCGTTTACATGATGCTCATTCTTGTATCAATAAGAAAGTTAACATTGTAGCCGTTGTTCTTGAGTTTGGTCTCCCCAAAACAACTAAAGGCACCGATTGGTGTTGTACTCTAAGATTGATTGATGAAACACATCACCAAACCGGTATGACTGTTAATATTTTTACTGAAAATGCTGAAAGCCTTCCCCTTGTTGCTGCTTATGGAGACATAATTCAGCTTTCTAATGTTACGTTAAGGGCGCATATTAAGGAAGTAAATGCTGTTTTCTACAAAAACTGTTCCTCTTTTGCCTTATACAGAGGGAATGGTGATGATGATGATTTTGTGCCTTATCAAGTTTACTCAAGTGTTTTCGTCAGAGATGACGACAAAATGCGCATAAACATGCTTCGAAGATGGTTGGTCAATTTTCAGATTCCCTCAGATTCAAATGAGTTTCCAAAGCTAAGAGAAATCAAAGAAGGTGTCTTTAATTTGGCCGGCAAGGTACTTCATTGCCGGGAGTCTTTAGAAGATAATTGGTCTGTCTATGTTTGGGATGGATCAGATACGCCGCCAAATGTCTTAACTTCAATGCTGGAAGATGAAATCAATCATCCACTTCCATTACAATCAGAATCTCTGCCTTTGCCAAGAGATGTACTATGTACTCTGCCTACTGTTGGCTCCATATTAAGGATTGCTTTTGAACTACCCGTTCAGAAAAATCATCTCAATGTTTTTAGAAGTGGTAAATGGGTCAAGTTTATTGACATACGTCTCAAAGTGTATGGAGGACTGTGGTATGGTGTTTTTACTTCACACTCAAAGCTTCGACATATGCATGATAAAGATCGTCTCATTATAGAACACCAAAGGTTGTATGATGACCGCATATTGTTGAAATCAGGAAACATGCCTATTGGCAGCATGCCTCAGTCCATTGACAGCTTACCCGAGTCTTTATGTATTACAAAGGTTAATCACGATCGTGCGCGGCATCTTACTTTAATGGATGTACTAACTCATCCAGAGGTGACGGCTAAGTTTAAGTCTGTTGTTCGAGTGGTAGCAGCAGCACCATACCAAGCTGAAAAGTTTTGCTCTCCTGCTGGGAAGTATATGATGAGACTGACCCTAGAGGATCCAACAGCTAGAATCCATGCTTATGTAGTTGATGAAGATGGGGAGACTCTTTTTGATGGTTATCCCGGCACTGCAAATGTAAAGAGGAAGTTGAACAGATTGCTTGGAGTAACTGAATGTAATGACAGTTTTGTGGTAAATGATTGGCCAAGAAATCCACCATGGGTGAGTGTTTGTATTAAATCATACTATGTCTCCAAAACTGACGTATGGGGAAGTAGAAACTTTAGAATATTTGACACCAAAATAGTGGATGGCCCTTAA 1419 0.3961 MAVRNDYKLLRLHDAHSCINKKVNIVAVVLEFGLPKTTKGTDWCCTLRLIDETHHQTGMTVNIFTENAESLPLVAAYGDIIQLSNVTLRAHIKEVNAVFYKNCSSFALYRGNGDDDDFVPYQVYSSVFVRDDDKMRINMLRRWLVNFQIPSDSNEFPKLREIKEGVFNLAGKVLHCRESLEDNWSVYVWDGSDTPPNVLTSMLEDEINHPLPLQSESLPLPRDVLCTLPTVGSILRIAFELPVQKNHLNVFRSGKWVKFIDIRLKVYGGLWYGVFTSHSKLRHMHDKDRLIIEHQRLYDDRILLKSGNMPIGSMPQSIDSLPESLCITKVNHDRARHLTLMDVLTHPEVTAKFKSVVRVVAAAPYQAEKFCSPAGKYMMRLTLEDPTARIHAYVVDEDGETLFDGYPGTANVKRKLNRLLGVTECNDSFVVNDWPRNPPWVSVCIKSYYVSKTDVWGSRNFRIFDTKIVDGP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06483 472 SUPERFAMILY Nucleic acid-binding proteins 159 288 IPR012340 -
Vivi5g06483 472 SUPERFAMILY Nucleic acid-binding proteins 10 149 IPR012340 -
Vivi5g06483 472 Gene3D - 9 152 IPR012340 -
Vivi5g06483 472 CDD hPOT1_OB1_like 7 143 - -
Vivi5g06483 472 PANTHER PROTECTION OF TELOMERES 1 5 468 IPR028389 GO:0000723|GO:0043047
Vivi5g06483 472 Pfam Telomeric single stranded DNA binding POT1/CDC13 19 144 IPR011564 GO:0000723|GO:0000781|GO:0003677
Vivi5g06483 472 SMART Telo_bind_a_2 9 145 IPR011564 GO:0000723|GO:0000781|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06483 Vivi-Chr5 171469036 171472530 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06483 - - qsa:O6P43_008475 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06483 5 171469036 171472530 Vivi5g06483 5 171469036 171472530 ECH