Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06482 ATGCCCACCGCCAAGTTATTCATCTCTCTCCTCAGTTTCTCTCTCCTCACTCTCTCCGTCACCTCCCGCCCCTACGTCCTCGTCCTCTCCCAAGAAGACTTCAAAGACGAAGCCCCTTCCGATCCCGATTCCTCCCCCGAGTGGGACGAGTTCGGCGACTCCGACTCTCACAAATCCGAAGAGGATCTCGACCCTGGATCATGGCGCCAAATCTTCGAACCAACCTCCACCGAACCTCAACCCCAACCCCAATCCGATACCGAGGCTCTCTACTACTCCGCCGTCACCAAGCTTATGACGGGAGACGCGAGGCTAATCGAAGAAGGCTCCGGTGAGATTGAGACGGCTGCGGAGTCTGGATACCCGGCGGCACAATCGGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGAGGAGTAAACAGAAATCATTTGTTTATCATCATTTTGCTTCTGAGGGTGGCAATATGCAATCCAAAATGGCTCTTGCTTATACCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTAGCTGAAGTGGCTGTGAATGGTTTTCTGATTTCGAAAGATTCCCCGGTGATTGAACCTATTAGGCTACACAATGGAGCTGAAGAGAACAAAGAGGCACTTAGAAAATCTAAAGGGGAAGAGGATGAGGATTTTCAGATTCTCGAGTATCAGGCGCAGAAAGGGAATGCGGCTGCTATGTATAAAGTGGGACTCTTTTACTATTTTGGGCTACGTGGATTGAGGCGCGACCATTCTAAGGCACTCTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTGGGAGAGATATATGCGAGGGGAGCAGGTGTTGAGAGAAACTATACAAAAGCCTTTGAATGGCTTACTCTTGCATCTAAGCATCACCTCTACTCTGCGTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGCGTCGACAGCAAAAATTACACAAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTATCTCAAGGGGATTGGAGTGAAAAGAGATGTGAGGTTGGCTTGTAAATACTTTATAGTAGCTGCCAACAACGGTCAACCGAAGGCTTTCTACCAACTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTCCCATTGGCTACTGCCTTATACAAATTAGTTGCAGAACGAGGTCCATGGAGCTCTTTGTCCAGATGGGCACTGGAAGCATACTTAAAAGGTGATGTTGGCAAGGCATATATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTTGATAAATATGGAGAACGAAGCATGTGCATGGGTGAATCTGGACTTTGCACTGATGCAGAAAGGCATCAGCGGGCACATTCTTTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTAATTGGAGACGCATATTACTATGGCAGGGGAACTGTCAGGGATTATGACCGAGCTGCTGAGGCTTACATGCATGCCAAATCACAATCTAATGCACAGGCCATGTTCAATCTTGGCTACATGCATGAGCATGGCCAAGGACTTCCCCTTGACCTTCATCTAGCCAAGCGTTACTATGATGAAGCTCTAGAGCAGGATCCTGCAGCTAAGTTGCCAGTTACACTGGCTCTTACAAGCCTGTGGGTTCGGATGAACCATGCTGACAGTTTTTTGGTCCACATAATTGATTCTTTGCCAGATGTCTATCCAAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGAAATGCCACAATTCTAACCCTCTTTGCATGCCTCCTAACTGTGTTGTATCTGCGCGAGAGGCAAAGACGGCAAGCTGCTGTTGTAGTTGGTGAGGTCGCTCAGCCGAATCTCCCTAATGAGCTTGGTATGCCAGCACCTCTTGGTATGCCAGCACCCATGAGATAG 2034 0.4744 MPTAKLFISLLSFSLLTLSVTSRPYVLVLSQEDFKDEAPSDPDSSPEWDEFGDSDSHKSEEDLDPGSWRQIFEPTSTEPQPQPQSDTEALYYSAVTKLMTGDARLIEEGSGEIETAAESGYPAAQSVLGFLWGMGLLRERSKQKSFVYHHFASEGGNMQSKMALAYTYTRQDMFDKSVKLYAELAEVAVNGFLISKDSPVIEPIRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMYLKGIGVKRDVRLACKYFIVAANNGQPKAFYQLAKIFHLGVGFKKNVPLATALYKLVAERGPWSSLSRWALEAYLKGDVGKAYMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGLCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTVRDYDRAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDEALEQDPAAKLPVTLALTSLWVRMNHADSFLVHIIDSLPDVYPKLEAWVENVLLEEGNATILTLFACLLTVLYLRERQRRQAAVVVGEVAQPNLPNELGMPAPLGMPAPMR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06482 677 Gene3D Tetratricopeptide repeat domain 112 215 IPR011990 GO:0005515
Vivi5g06482 677 Gene3D Tetratricopeptide repeat domain 216 593 IPR011990 GO:0005515
Vivi5g06482 677 SMART sel1 386 421 IPR006597 -
Vivi5g06482 677 SMART sel1 313 349 IPR006597 -
Vivi5g06482 677 SMART sel1 538 573 IPR006597 -
Vivi5g06482 677 SMART sel1 350 385 IPR006597 -
Vivi5g06482 677 SMART sel1 122 157 IPR006597 -
Vivi5g06482 677 SMART sel1 277 312 IPR006597 -
Vivi5g06482 677 SMART sel1 240 276 IPR006597 -
Vivi5g06482 677 SMART sel1 502 537 IPR006597 -
Vivi5g06482 677 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 652 IPR044623 GO:0030433
Vivi5g06482 677 Pfam Sel1 repeat 435 453 IPR006597 -
Vivi5g06482 677 Pfam Sel1 repeat 538 572 IPR006597 -
Vivi5g06482 677 Pfam Sel1 repeat 240 275 IPR006597 -
Vivi5g06482 677 Pfam Sel1 repeat 353 384 IPR006597 -
Vivi5g06482 677 Pfam Sel1 repeat 504 526 IPR006597 -
Vivi5g06482 677 Pfam Sel1 repeat 314 348 IPR006597 -
Vivi5g06482 677 Pfam Sel1 repeat 278 310 IPR006597 -
Vivi5g06482 677 MobiDBLite consensus disorder prediction 33 68 - -
Vivi5g06482 677 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 205 316 - -
Vivi5g06482 677 MobiDBLite consensus disorder prediction 50 67 - -
Vivi5g06482 677 SUPERFAMILY HCP-like 221 330 - -
Vivi5g06482 677 SUPERFAMILY HCP-like 113 186 - -
Vivi5g06482 677 SUPERFAMILY HCP-like 332 461 - -
Vivi5g06482 677 SUPERFAMILY HCP-like 433 574 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06482 K14026 - gmx:100787823 1146.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06482 5 171461863 171467764 Vivi5g06482 5 171461863 171467764 ECH