Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06374 ATGAACGTTGCAACTTGTTCGATGCTTCGTTTACAGTTTCCAATCTGGAGCTTCACAAAACCCCTAATCTCTACGCGCTTCAACATGCGTTTGTTATCCGTTCGAAATTGCTCAGCTTCATCCATATCCACCACCACCACTGAACCCACAAAGTCGAAGAAGAATGAACCCTGGTTAATCGTCGGCCTCGGTAATCCCGGTAAAAAGTACGCTGCTACACGCCACAATGTGGGATTTGAAATGGTTGATGCTATAGCTGAAGCTGAAGGGATTTCTATGAGTAGTGTTTCCTTCAAAGCTCTATTTGGAAAAGGTTTTATAGGCAATGTACCAGTGTTACTTGCAAAACCACAGACTTTTATGAACTTAAGTGGTGAATCTGTTGGGGCCATAGTTTCATATTACAAGATTCCATTGAAGCAAGTAATTGTGATCTTTGACGACTTGGACCTGCCTTTTGCTAAACTGCGGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGAATGAAAAGTGTTATTAATCACTTAAAAGGGAACTCTGGTTTTCCTCGCTTAAGAATTGGTATTGGACGACCTCCAGGGAAAATGGATCCTATCTCATTCGTTCTTCGACAGTTCACTAAACAGGAAAGAGAAGAACTGAATTTTACCCTACAACATGGATTAGAAGCCGTGCGGATTATTTTGTTGGAGGGATTTGATAAAGGCGCAACATTTGTTAATACTGCCAAAAAGATAGAGCAAATTGGCTGA 756 0.4167 MNVATCSMLRLQFPIWSFTKPLISTRFNMRLLSVRNCSASSISTTTTEPTKSKKNEPWLIVGLGNPGKKYAATRHNVGFEMVDAIAEAEGISMSSVSFKALFGKGFIGNVPVLLAKPQTFMNLSGESVGAIVSYYKIPLKQVIVIFDDLDLPFAKLRLLPKGGHGGHNGMKSVINHLKGNSGFPRLRIGIGRPPGKMDPISFVLRQFTKQEREELNFTLQHGLEAVRIILLEGFDKGATFVNTAKKIEQIG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06374 251 Hamap Peptidyl-tRNA hydrolase [pth]. 57 235 IPR001328 GO:0004045
Vivi5g06374 251 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 70 83 IPR018171 GO:0004045
Vivi5g06374 251 NCBIfam aminoacyl-tRNA hydrolase 58 227 IPR001328 GO:0004045
Vivi5g06374 251 PANTHER PEPTIDYL-TRNA HYDROLASE 51 242 IPR001328 GO:0004045
Vivi5g06374 251 SUPERFAMILY Peptidyl-tRNA hydrolase-like 57 242 IPR036416 GO:0004045
Vivi5g06374 251 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 163 173 IPR018171 GO:0004045
Vivi5g06374 251 FunFam Peptidyl-tRNA hydrolase 54 245 - -
Vivi5g06374 251 Pfam Peptidyl-tRNA hydrolase 59 236 IPR001328 GO:0004045
Vivi5g06374 251 Gene3D - 43 245 IPR036416 GO:0004045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06374 Vivi-Chr5 170259418 170263476 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06374 K01056 - gmx:100526866 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06374 5 170259418 170263476 Vivi5g06374 5 170259418 170263476 ECH