Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06094 ATGCCAGGTCTCGTCTCCCCCGGCGGACCTCCGCCCCGAATCACTTTACCCGAAACCCCCCAAAGATCCGACCCCACCAAAACACCACCCTCCCACTCCCCACTCCCCAAAAAACCACCCTCCCCCTCCCCTTCCTCCCGCTCCAAAAAGAAAACCCCCGATACCCCAACCAACTCCAACACTCTCCTCCTCTCAGAAGCCTCGCTCGATAACCCAGATCTCGGCCCCTTCCTCCTCAAACTCGCCCGCGACACCATCGCCTCTGGCGATGGCCCTTCCAAAGCCCTCGACTACGCCATCCGCGCCTCCAAATCCTTCGAACGCTGCGCCGTCGATAACATCCCCAGCCTCGACTTCGCTATGAGCCTCCACGTCCTAGCCGCGATTTACTGTAGCTTAAGCAGATTCGAAGAAGCTGTACCTGTCCTCGAACAAGCGATCCTTGTTCCCGATGTCAAAACCGGCGCCGATCACGCTCTCGCTGCTTTCTCAGGCTATATGCAGTTAGGTGACACTTTCTCCATGCTAGGTCAGGTTGATAAATCCATTTCGTGTTATGAACAAGGTCTTCAGATTCAGATGCAAACCCTAGGTGAAACCGATCCGCGCGTGGGAGAGACGTGTCGGTATTTGGCGGAGGCGAATGTTCAGGCGATGCAGTTTGATAAAGCGGAGGAGCTTTGTAATAAGACTTTAGAGATCCATCGTGCGCATAGTGAGCCTGCTTCGCTCGAGGAAGCTGCGGATCGGAGGCTGATGGCGTTGATTTGTGAAGCGAAGGGAGATTACGAGCCGGCGCTTGAGCATCTTGTTTTGGCGAGTATGGCGATGATTGCGAATGGACAAGATACGGAAGTTGCTTCAATTGATGTGAGCATTGGGAATATTTATATGTCTTTGTGTCGATTTGATGAGGCTATATTCTCTTATCAGAAAGCGCTTACAGTGTTTAAATCGTCGAAAGGAGAGAATCATCCTTCGGTTGCGTCTGTGTTTGTTCGGTTGGCTGATTTGTATCATAGGACGGGGAAGCTTCGTGAATCGAAATCTTATTGTGAAAATGCGCTTAGGATATACTCGAAACCGGTTCCTGGGACAACTGCGGAGGAGATTGCTGGTGGTTTGACCGAGGTTTCGGCTATATTTGAATCTGTGGATGATCCGGAGGAGGCCTTGAAGCTGTTGCAGAAGGCGATGAAATTGTTGGAGGATAAGCCTGGACAGCAGAGCACGATTGCAGGTATAGAAGCGCGGATGGGAGTGATGTATTATATGATTGGGAAGTATGATGAAGCGAGAAGTGCTTTTGAGAGTGCTGTGTTGAAATTGAGAACCAGTGGGGAAAGAAAATCTGCATTTTTTGGTGTTGTTTTGAACCAAATGGGATTGGCTTGCGTGCAATTGTTTAAGATTGATGAAGCTGCTGAATTGTTTGAGGAAGCTAGAGGAATTCTTGAACAAGAATGTGGACATTGTCATCAAGATACTCTTGGAGTTTATAGCAATCTTGCAGCAACTTATGATGCAATGGGAAGGGTTGGAGATGCAATTGAAATCTTAGAATATGTTCTAAAGTTGAGGGAAGAGAAACTTGGAATAGCAAATCCTGATTTTGAAGACGAGAAGCGTCGTTTAGCTGAGTTGCTGAAAGAAGCTGGTAAGACACGAGACAGAAAAGCAAAATCTTTGGAAAATCTGATTGATCCGAATTCAAAGAGGACAAAGAAGGAGAGTACCAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1770 0.4831 MPGLVSPGGPPPRITLPETPQRSDPTKTPPSHSPLPKKPPSPSPSSRSKKKTPDTPTNSNTLLLSEASLDNPDLGPFLLKLARDTIASGDGPSKALDYAIRASKSFERCAVDNIPSLDFAMSLHVLAAIYCSLSRFEEAVPVLEQAILVPDVKTGADHALAAFSGYMQLGDTFSMLGQVDKSISCYEQGLQIQMQTLGETDPRVGETCRYLAEANVQAMQFDKAEELCNKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYEPALEHLVLASMAMIANGQDTEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAIFESVDDPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMYYMIGKYDEARSAFESAVLKLRTSGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGHCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKESTKRWPGLGFRI 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06094 589 MobiDBLite consensus disorder prediction 45 61 - -
Vivi5g06094 589 MobiDBLite consensus disorder prediction 554 589 - -
Vivi5g06094 589 Gene3D Tetratricopeptide repeat domain 274 455 IPR011990 GO:0005515
Vivi5g06094 589 Gene3D Tetratricopeptide repeat domain 456 581 IPR011990 GO:0005515
Vivi5g06094 589 Pfam Tetratricopeptide repeat 286 360 - -
Vivi5g06094 589 Pfam Tetratricopeptide repeat 457 529 - -
Vivi5g06094 589 MobiDBLite consensus disorder prediction 1 61 - -
Vivi5g06094 589 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 449 566 - -
Vivi5g06094 589 SUPERFAMILY TPR-like 414 555 IPR011990 GO:0005515
Vivi5g06094 589 ProSiteProfiles TPR repeat profile. 287 320 IPR019734 GO:0005515
Vivi5g06094 589 SMART tpr_5 455 488 IPR019734 GO:0005515
Vivi5g06094 589 SMART tpr_5 287 320 IPR019734 GO:0005515
Vivi5g06094 589 SMART tpr_5 329 362 IPR019734 GO:0005515
Vivi5g06094 589 SMART tpr_5 120 153 IPR019734 GO:0005515
Vivi5g06094 589 SMART tpr_5 163 196 IPR019734 GO:0005515
Vivi5g06094 589 SMART tpr_5 413 446 IPR019734 GO:0005515
Vivi5g06094 589 SMART tpr_5 205 238 IPR019734 GO:0005515
Vivi5g06094 589 SMART tpr_5 372 405 IPR019734 GO:0005515
Vivi5g06094 589 SMART tpr_5 497 530 IPR019734 GO:0005515
Vivi5g06094 589 Coils Coil 538 558 - -
Vivi5g06094 589 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 31 572 - -
Vivi5g06094 589 MobiDBLite consensus disorder prediction 1 43 - -
Vivi5g06094 589 Pfam MalT-like TPR region 112 274 IPR041617 -
Vivi5g06094 589 SUPERFAMILY TPR-like 162 360 IPR011990 GO:0005515
Vivi5g06094 589 Gene3D Tetratricopeptide repeat domain 109 273 IPR011990 GO:0005515
Vivi5g06094 589 MobiDBLite consensus disorder prediction 554 583 - -
Vivi5g06094 589 SUPERFAMILY TPR-like 71 192 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06094 Vivi-Chr5 166061203 166063965 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06094 - - gmx:100815100 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06094 5 166061203 166063965 Vivi5g06094 5 166061203 166063965 ECH