Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06072 ATGTCCATTTCCATGAGTTGTTTTTGCCTTACCAGAAGTAGATCAAAAGTTAAGCACGAACAATCTTCCATACTTGCTTCCGAGACATCATTTACTGTGAATGAGGTTGAGGCTTTATTTGACTTGTTTAAGAAACTAAGCAGTTCAATTATTGATGATGGCTGCATTCACAAGGAGGAGTTCCAACTTGCACTTTTTAGAAATAGTAGCAAGCAAAATCTACTTGCAAGCAGGGTATTTGATATGTTTGATATTAAGCGTAATGGAGTTATCGAATTTGGTGAATTCGTTCGTTCCCTAAGCATCTTTCATCCACGGGCATCCGAGGACAAGAAAATTGAATTCGCGTTTAAACTGTTTGATCTTCGAAATACCGGATACATTCAACATAGTGAGTTAAGGGAGATGGTATTGGCTACTTTGAATGAATCAGAAGTTACCGTTTCAGATGATATTGTTGAATCCATCGTGGAAAAGACAATGATGGAGGTTGATTCAAAAGGAGACGGGAAGATTGATATGGAAGAGTGGAAAGAATACGCGGCAAAAAATCCTTCTCTTCTTAAGATCATGACTCTGCCATATCTAAAGGATATAACTATGGCATTTCCAAGCTTCGTTTTGCACACCGAAGTGGAAGACTAG 645 0.3829 MSISMSCFCLTRSRSKVKHEQSSILASETSFTVNEVEALFDLFKKLSSSIIDDGCIHKEEFQLALFRNSSKQNLLASRVFDMFDIKRNGVIEFGEFVRSLSIFHPRASEDKKIEFAFKLFDLRNTGYIQHSELREMVLATLNESEVTVSDDIVESIVEKTMMEVDSKGDGKIDMEEWKEYAAKNPSLLKIMTLPYLKDITMAFPSFVLHTEVED 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06072 214 SUPERFAMILY EF-hand 25 207 IPR011992 -
Vivi5g06072 214 CDD EFh 112 179 IPR002048 GO:0005509
Vivi5g06072 214 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Vivi5g06072 214 Pfam EF-hand domain pair 111 179 IPR002048 GO:0005509
Vivi5g06072 214 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Vivi5g06072 214 PRINTS Recoverin family signature 17 31 - -
Vivi5g06072 214 PRINTS Recoverin family signature 79 100 - -
Vivi5g06072 214 PRINTS Recoverin family signature 172 192 - -
Vivi5g06072 214 PRINTS Recoverin family signature 126 144 - -
Vivi5g06072 214 PANTHER CALCINEURIN B 6 214 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vivi5g06072 214 FunFam calcineurin B-like protein 3 21 214 - -
Vivi5g06072 214 Pfam EF-hand domain pair 53 98 IPR002048 GO:0005509
Vivi5g06072 214 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Vivi5g06072 214 Gene3D - 22 214 - -
Vivi5g06072 214 SMART efh_1 75 103 IPR002048 GO:0005509
Vivi5g06072 214 SMART efh_1 156 184 IPR002048 GO:0005509
Vivi5g06072 214 SMART efh_1 112 140 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06072 Vivi-Chr5 165761281 165763415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06072 5 197 EF-hand Containing Proteins AT1G64480 65.285 4.40e-88 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06072 K06268 - qsa:O6P43_034353 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06072 5 165761281 165763415 Vivi5g06072 5 165761281 165763415 ECH