Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06071 ATGTCCATTTCCATGAGTTGTTTTTGCCTTACCAGAAGTAGATCAAAAGTTAAGCACGAACAATCTTCCATACTTGCTTCCGAGACATCATTTACTGTGAATGAGGTTGAGGCTTTATTTGACTTGTTTAAGAAACTAAGCAGTTCAATTATTGATGATGGCTGCATTCACAAGGTATTTGATATGTTTGATATTAAGCGTAATGGAGTTATCGAATTTGGTGAATTCGTTCGTTCCCTAAGCATCTTTCATCCACGGGCATCCGAGGACAAGAAAATTGAATTCGCGTTTAAACTGTTTGATCTTCGAAATACCGGATACATTCAACATAGTGAGTTAAGGGAGATGGTATTGGCTACTTTGAATGAATCAGAAGTTACCGTTTCAGATGATATTGTTGAATCCATCGTGGAAAAGACAATGATGGAGGTTGATTCAAAAGGAGACGGGAAGATTGATATGGAAGAGTGGAAAGAATACGCGGCAAAAAATCCTTCTCTTCTTAAGATCATGACTCTGCCATATCTAAAGGATATAACTATGGCATTTCCAAGCTTCGTTTTGCACACCGAAGTGGAAGACTAG 585 0.3812 MSISMSCFCLTRSRSKVKHEQSSILASETSFTVNEVEALFDLFKKLSSSIIDDGCIHKVFDMFDIKRNGVIEFGEFVRSLSIFHPRASEDKKIEFAFKLFDLRNTGYIQHSELREMVLATLNESEVTVSDDIVESIVEKTMMEVDSKGDGKIDMEEWKEYAAKNPSLLKIMTLPYLKDITMAFPSFVLHTEVED 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06071 194 Gene3D - 22 194 - -
Vivi5g06071 194 PANTHER CALCINEURIN B 6 58 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vivi5g06071 194 Pfam EF-hand domain pair 91 159 IPR002048 GO:0005509
Vivi5g06071 194 CDD EFh 92 159 IPR002048 GO:0005509
Vivi5g06071 194 FunFam calcineurin B-like protein 3 56 194 - -
Vivi5g06071 194 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Vivi5g06071 194 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Vivi5g06071 194 ProSiteProfiles EF-hand calcium-binding domain profile. 132 167 IPR002048 GO:0005509
Vivi5g06071 194 Pfam EF hand 57 78 IPR002048 GO:0005509
Vivi5g06071 194 SUPERFAMILY EF-hand 25 187 IPR011992 -
Vivi5g06071 194 SMART efh_1 55 83 IPR002048 GO:0005509
Vivi5g06071 194 SMART efh_1 136 164 IPR002048 GO:0005509
Vivi5g06071 194 SMART efh_1 92 120 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06071 Vivi-Chr5 165761276 165763415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06071 5 177 EF-hand Containing Proteins AT1G64480 57.513 2.59e-72 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06071 K06268 - qsa:O6P43_034353 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06071 5 165761276 165763415 Vivi5g06071 5 165761276 165763415 ECH