Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06063 ATGATTCTAAACCTTTCTACTCCTTCATTCTCTCGTTTACTTCCTCACCCTTATTCTCATCCTCTCTTCAAGCTCTCTGAAACTTGTTCTAACCGCAACAACGCTCCTCATCCGCTTCAGATTTTCACTTCTTCCTCATCGAAATTCCTCAACCTCAAAGCTTCTGTTAGCCAGAATGAAACCTCTAATTCCAATCTATTGGATCAACAGCTTCTTCACCGAATTGCCGCCACCGCTAAAGACGCCGACGAAGCATTGCAGTTAATCTCCGATCACTCTTCCACTAATTCCGGCGTTGTTTCTACTTCGGATTGTTGCTCTATTATTTCTGCATCGCTTGAACGGAATAATCATCAGCTTGCTTTGTCCGTTTTCTACTCCATGCGCTCCACTTTTCATCAAGTTGATGAGAATGGTCCTTTAGTTGAGAGATGGAAATGGTCGAGGCCGAATGCACGTGTTTATACAATGTTGATTCAGGGTTTGGCTGCATCTTTGAGGGTTTCAGATGCTCTTAGTGTGGTTAAGTATATCTGTGAGGTGGGCGTGTCTCCTTCTGAAGAGGTTCCTTTTGGGAAGATAGTGAGGTGTCCTAGTTGTCGGATAGCTGTTGCAGTTGCACAGCCACAGCAAGGTATTCAGATAGTATCTTGTGCAAAGTGTCGCTACCAATATGAACTTGTTTCAGGAAACATAGTCAGTATTCAATCAGAAGAAATCAGCATGGACATTACAGCATGGGAAAAGGGGTTAAGATTCCTGAAACTGATGAAGCAGGGAATTCCTTCTGCTGTTCACTCTATTGTGGTGGAGACCCCTTCAGGTATGGCTCGTACTCACAGATTTGCAACTGAGACAGTCGAACTACCAGCACAAGAAGGCGAAAGGGTTACTGTTGCTGTGGCAGCTCCATCAAATGTATATAGAAATCTAGGCCCCATTAAATTAAGTTCAAGGGCACCAAATTTCTATCCTGGTGAGGCTATGTGCATAACAAACCACAAAGATGGACGGGAATCACGTCTTGTACGAGCCCCTAGGAAAGATGAAAATTCATCATTACTTAAACCCTCCATCCTCTTTCCACTTCTTGCTTTGTTTGCCACCGGTGATGCTGCCTCTGGATTTATTGACCCCAGTCTTCCTCAGTTCCTGTCAGTTGTTGCAGTTTCATCTCTTGCTGTTGGCTCTGCTTTGAATTCCTTTGTTATCCCCCAGCTTAATCAGCTGCCGCAAAGATCAGTGGAAGTAGTTGCTATCAAACAACGTCTTTTATCTCAATATGACGTGCTTCAGTCTCGCATCAATGACCTAAAAGAAGCTGCTGAAAAAGAGGTTTGGATGTTAGCCCGGATGTGCCAACTTGAAAATAAAATTTCTGCTGTTGGAGAGCCTTCTTATCGGACTAGGATAAATAAAGTCAAAAGGGTCCGAGAGAGCTTGCAGAACTCCCTCCAGGGACGAGTTGAATTGATTGCTAGCTTTGCTAGGATTTCCTCAATGATTGAAATTGAAGTGGAGATGGAAACTGATGTTCTTGCTGCTGAAACGACTAGTGATGTGGATGGTTTCACCGAACAGATAGAGCAAATCATGGAGCTTGAAAATTTAGAGGAGAGATGGAAAATGCAAGCAGAAGCAAATGATGAGGCTGAAAGACTTCTTAGCTCCCAGCCCCTGCCATTGGACGAAGTTTAA 1698 0.4376 MILNLSTPSFSRLLPHPYSHPLFKLSETCSNRNNAPHPLQIFTSSSSKFLNLKASVSQNETSNSNLLDQQLLHRIAATAKDADEALQLISDHSSTNSGVVSTSDCCSIISASLERNNHQLALSVFYSMRSTFHQVDENGPLVERWKWSRPNARVYTMLIQGLAASLRVSDALSVVKYICEVGVSPSEEVPFGKIVRCPSCRIAVAVAQPQQGIQIVSCAKCRYQYELVSGNIVSIQSEEISMDITAWEKGLRFLKLMKQGIPSAVHSIVVETPSGMARTHRFATETVELPAQEGERVTVAVAAPSNVYRNLGPIKLSSRAPNFYPGEAMCITNHKDGRESRLVRAPRKDENSSLLKPSILFPLLALFATGDAASGFIDPSLPQFLSVVAVSSLAVGSALNSFVIPQLNQLPQRSVEVVAIKQRLLSQYDVLQSRINDLKEAAEKEVWMLARMCQLENKISAVGEPSYRTRINKVKRVRESLQNSLQGRVELIASFARISSMIEIEVEMETDVLAAETTSDVDGFTEQIEQIMELENLEERWKMQAEANDEAERLLSSQPLPLDEV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06063 565 Gene3D Tetratricopeptide repeat domain 66 263 IPR011990 GO:0005515
Vivi5g06063 565 Coils Coil 534 554 - -
Vivi5g06063 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Vivi5g06063 565 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 41 563 - -
Vivi5g06063 565 Coils Coil 421 441 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06063 - - gmx:100781803 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06063 5 165682663 165688700 Vivi5g06063 5 165682663 165688700 ECH