Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06049 ATGAACAACGAAACCGAATTAGTTCAACTTTGCTTAAACGCAGCTTGCATAACCAGTCAAACCGTTGACAAATGGCGCTTACAGCGACGCTCTCTCGATCGCCTACCTTCTCATCTTGCCGACGCTCTCCTCCGCTGCCTCATCACTCGCCGTCTCCTCCACCCCTCCCTCCTCGAGGTTTTCAAACACAGTGCGGAAGAGATTGATTTGAGAGGCGATAACTCTGTTGATGCAGAATGGATGGCTTATTTGGGAGCGTTTCGCCATTTGCGCTATTTGAATATTGCTGAATGTCACCGAATTAATTCTTCAGCTCTTTGGCCTACTGCAGGAATGAATAGTCTTAAAGAGTTGGATCTATCTAGATGCTCCAAAGTTAATGATGCTGGAATTAATCATATACTTTCTATTCCTAATTTGGAAAAGTTGCACATTTCGAAAACTGGTGTTACTGCCAAAGGAATCAAGCTTCTTGCTTCTCTTAAAAAATTGTCGCTTCTTGATTTGGGTGGTTTGCCCGTGGATGATGCAGCTTTAGCTTCGCTGCAGGTACTGGAAAATCTACAACACATTGAACTCTGGGGTAGTAAAGTATCAAATGAAGGCGCTGCCCTTCTTAATAACTTTCCCAAGTTAACCCATCTAAATCTTGATTGGACCAGTGTCACAAAATTGCCTAATTTATCAGCTCTTGAATGCCTCAACATGAGTAATTGTACTATTGACTCTATTCTCAAAGATGATAAATCTCCTTTGACAAAGCTTATTTTCTCCGGGTCTAAATTCCTGAATGAAGCTGAAACCCTATTGTATGCAAATATAAGTTTCTTGTCCTTTCTGGACTTGGCCCATACCGGCCTTGACAAATTCTTCTTCTTAAGTAAACTGAAAGTAATAGAACATCTCAATCTCAGCTCATGTATGATGGATGATGATTCAGTTGAGATTGTTGCATGTATTGGTGGAAAGTTGAAAAGTCTGAATCTGAGTGGAACTTGTGTTAGCTCGGCTGGATTAGGGGTTTTAGCTGGACATGTTCCCAATCTTGAAATTCTGTCGCTATCTCAAACATCAGTGGATGATACTGCCTTCTCATTTATCAGCATGATGCCTTCATTGAAGGATGTTGATCTGAGCAGTACAAACATCAAAGGATTTTTGAACCAGGGAGAGACTGACTCGGACTCTCTCTCTCTTACGACCATACAAAATCTTGAACAATTAGAAAGGCTGAATTTGGAGCACACTCAAGTCATCAATGAAGCTTTATTCCCTTTATCAAGCTTCCAAGCGCTGCGATATTTATCTCTTAAAAGTCCTTCACTTGCAGACATCTCACTTTACCATCTATCATCAGTTCCTAAATTGACAAAGCTAAGTATCTGCGATGCAGTTTTGACCAATTATGCTCTTGAAAAGTTTAAGGTTCCTGAAACTCTCAAACTGATGGACCTCAGAGGTTGTTGGCTCTTAACAAAAGAAGCTATCTTATCATTCTGTAGAAATCATCCACAAATTGAAGTAAGGCATGAACTTGTTACGGTACTTCCCTTTGAAGAAATTGGACGTCATAATCATTCATCTCCATCTCGATTAACTTCAAGGACTATGCAAGCAACTAAGAAGAAAGAACAAACGTCCTTATCTCCATCTTTTGTAGATCAAAGGATGAAATATAGCAGAGATGAGTTACTTGCATTTCAGTTTATGTCTTTGCCTCTTGCATCCAGTAGTGAGAGGGACAACTCAATACTTGAGAAGCAATTGGATTCAATGCACAACTCGTCTGCATGA 1794 0.403 MNNETELVQLCLNAACITSQTVDKWRLQRRSLDRLPSHLADALLRCLITRRLLHPSLLEVFKHSAEEIDLRGDNSVDAEWMAYLGAFRHLRYLNIAECHRINSSALWPTAGMNSLKELDLSRCSKVNDAGINHILSIPNLEKLHISKTGVTAKGIKLLASLKKLSLLDLGGLPVDDAALASLQVLENLQHIELWGSKVSNEGAALLNNFPKLTHLNLDWTSVTKLPNLSALECLNMSNCTIDSILKDDKSPLTKLIFSGSKFLNEAETLLYANISFLSFLDLAHTGLDKFFFLSKLKVIEHLNLSSCMMDDDSVEIVACIGGKLKSLNLSGTCVSSAGLGVLAGHVPNLEILSLSQTSVDDTAFSFISMMPSLKDVDLSSTNIKGFLNQGETDSDSLSLTTIQNLEQLERLNLEHTQVINEALFPLSSFQALRYLSLKSPSLADISLYHLSSVPKLTKLSICDAVLTNYALEKFKVPETLKLMDLRGCWLLTKEAILSFCRNHPQIEVRHELVTVLPFEEIGRHNHSSPSRLTSRTMQATKKKEQTSLSPSFVDQRMKYSRDELLAFQFMSLPLASSSERDNSILEKQLDSMHNSSA 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06049 597 Gene3D Ribonuclease Inhibitor 395 517 IPR032675 -
Vivi5g06049 597 ProSiteProfiles Leucine-rich repeat profile. 211 232 IPR001611 GO:0005515
Vivi5g06049 597 PANTHER - 342 511 - -
Vivi5g06049 597 SMART LRR_CC_2 112 137 IPR006553 -
Vivi5g06049 597 SMART LRR_CC_2 477 502 IPR006553 -
Vivi5g06049 597 SMART LRR_CC_2 429 453 IPR006553 -
Vivi5g06049 597 SMART LRR_CC_2 161 185 IPR006553 -
Vivi5g06049 597 MobiDBLite consensus disorder prediction 527 547 - -
Vivi5g06049 597 Gene3D Ribonuclease Inhibitor 8 145 IPR032675 -
Vivi5g06049 597 Gene3D Ribonuclease Inhibitor 146 241 IPR032675 -
Vivi5g06049 597 Pfam Leucine Rich repeat 113 131 IPR001611 GO:0005515
Vivi5g06049 597 MobiDBLite consensus disorder prediction 524 547 - -
Vivi5g06049 597 Gene3D Ribonuclease Inhibitor 258 394 IPR032675 -
Vivi5g06049 597 SUPERFAMILY RNI-like 68 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06049 Vivi-Chr5 165518833 165522487 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06049 - - gmx:100814174 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06049 5 165518833 165522487 Vivi5g06049 5 165518833 165522487 ECH