Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05987 ATGGCTCATACACACAGAGAACAATTCAAACCCATAGCACCAAATTTCATATCATTATCAACTCATTACAGAAGCCCTAGTGCAGAAAACCAGCACCATAATTTATCAGAACACAAAACCAAAACCCTAAAAAAGTGTGCCATATGGTGTGGATGCATCACTGCAATTCTGTTATTACTCTTTGTAATACTCATAGTCCTAGCTTTCACAGTCTACAACGTTAAAGATCCTGAAGTGAGAATGAACGGAGTTACATTAATCAACGGAACCTTCACCGGTACCAACGCAACTAATATCGTTACGATTCTCGCTGATATGTCTGTGAAGAACACAAACTCATTTACTTTCAGGTATGGAGAAGTTAACACAACTGTTTATTACGATGGAACTGAGATCGGAAGAGGTGTAACGCCGCCGGGGAAAGCGAAAGCGCAGAGAACGGGGAGGTTTAACGTGACGCTGGAGATTATGGCGAAGAGGCTTGTGGATAAACCGGAATGGATTGTGGATATTAGAGATCAAGGTTTGAATTTTAGCACTTATACGAAGATGAGTGGGAAGGTGAAAATATTGAATTTGATTAAGAGGAAGGTTGGGGTTGAGTTGAATTGTACTAGTCAATATAATATTACTACTCGTTTGATCACACGTGGTGATAATTGTGTTGGGTTTGTAAGTATTTAG 684 0.3962 MAHTHREQFKPIAPNFISLSTHYRSPSAENQHHNLSEHKTKTLKKCAIWCGCITAILLLLFVILIVLAFTVYNVKDPEVRMNGVTLINGTFTGTNATNIVTILADMSVKNTNSFTFRYGEVNTTVYYDGTEIGRGVTPPGKAKAQRTGRFNVTLEIMAKRLVDKPEWIVDIRDQGLNFSTYTKMSGKVKILNLIKRKVGVELNCTSQYNITTRLITRGDNCVGFVSI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05987 227 Gene3D - 63 210 - -
Vivi5g05987 227 SUPERFAMILY LEA14-like 57 163 - -
Vivi5g05987 227 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 14 209 - -
Vivi5g05987 227 Pfam Late embryogenesis abundant protein 106 205 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05987 Vivi-Chr5 164383690 164384881 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05987 23 135 EF-hand Containing Proteins AT5G21130 29.412 7.46e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05987 - - tpra:123915732 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05987 5 164383690 164384881 Vivi5g05987 5 164383690 164384881 ECH