Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05967 ATGCCTTCTTCAGTTCACAGATTAACAATGGCAGCTATCGCTAACTCCTTATCACTCAAACACACTCTCGCAACTCGCTTTCCACAAACAACAACGCGAACTCGTCTTTATTCCACTTCCAGAACCTTCCAGAGATGTTACGCTTCTTACGCTAATGAAAATCGCGAGTATGTGATTGTTGGCGGCGGAAATGCGGCCGGATACGCCGCTCGTACTTTCGTCGAGCACGGTGTCGCCGATGGCCGTCTTTGTATTGTGACTAAAGAGGCGGTTGCACCTTACGAGCGTCCTGCTTTAACGAAAGCTTACTTGTTTCCTCCGGATAAGAAACCGGCGCGTCTTCCGGGGTTTCATACTTGTGTTGGATCTGGTGGAGAAAGGCAAACTCCAGAGTGGTATAAAGAGAAAGGGATAGAGACGTTGTATGAAGATCCGGTAGAAAACATTGATATTGAAAAGCAGACTTTGACAACGAGTTCTGGAAAGCTTCTTAAGTATGGATCACTTATTATTGCTACAGGATGTACATCCTCAAGGTTTCCAGAGAAAATTGGGGGAAACCTTGATGGTGTCCACTATATTCGGGATGTTGCAGATGCTGACTCGCTGGTTTCATCGTTGGAAAAAGCAAAAAAGGTTGTAGTAGTTGGAGGTGGTTATATAGGAATGGAGATTGCTGCTGCAGCTGTTGCTTGGAAACTTGATACTACAATCATATTTCCAGATGATCACTTTTTACAAAGATTGTTCACTCCTTCTCTTGCCCGTAGATATGAAGAACTCTACCAAAAGAATGGAGTTAAAATATTGAAGGGTGCCTCCATTAAGAATTTGGAAGCTAGTACTAATGGTAACGGACGTGTAGCTGCTGTCAAACTTGAAGATGGATCTATTGTTGAAGCAGATACTGTAATTATAGGCATTGGAGCGAAGCCTGCTGTTGGTCCCTTTGAGAGGTTGGGTTTGAATACTGATGTTGGTGGTATACAGGTTGATGGTCAGTTCCGGACAAGCATTCCAGGAATATTTGCTGTTGGTGATGTAGCCGCTTTCCCTTTAAAGATATACAACCGTGTTGCTCGAGTTGAACATGTAGATCATGCTCGTAGATCGGCACAGCACTGTGTGAAAGCATTACTCAGTGCACAAACTAGCACGTATGATTATCTTCCTTACTTCTACTCAAGGGTTTTTGAATATGAAGGAAGCACTAGAAAAGTATGGTGGCAGTTCTTCGGAGACAATGTTGGAGAAACGGTTGAAATCGGAAACTTTGATCCTAAAATAGCTACTTTTTGGATTGAATCTGGTAAGCTGAAGGGAGTTCTTCTTGAAAGTGGGAGCACTGAGGAATTTCAGCTCCTGCCTGAACTTGCCAGAAAGCAACCTTCTATTGATAAAGCCAAACTTGAAAAGGCGACCTCAGTGGAAGAGGCCCTAGACATAGCTCGGGGATCCTTGCAAGCCGCTGTCTAG 1476 0.4397 MPSSVHRLTMAAIANSLSLKHTLATRFPQTTTRTRLYSTSRTFQRCYASYANENREYVIVGGGNAAGYAARTFVEHGVADGRLCIVTKEAVAPYERPALTKAYLFPPDKKPARLPGFHTCVGSGGERQTPEWYKEKGIETLYEDPVENIDIEKQTLTTSSGKLLKYGSLIIATGCTSSRFPEKIGGNLDGVHYIRDVADADSLVSSLEKAKKVVVVGGGYIGMEIAAAAVAWKLDTTIIFPDDHFLQRLFTPSLARRYEELYQKNGVKILKGASIKNLEASTNGNGRVAAVKLEDGSIVEADTVIIGIGAKPAVGPFERLGLNTDVGGIQVDGQFRTSIPGIFAVGDVAAFPLKIYNRVARVEHVDHARRSAQHCVKALLSAQTSTYDYLPYFYSRVFEYEGSTRKVWWQFFGDNVGETVEIGNFDPKIATFWIESGKLKGVLLESGSTEEFQLLPELARKQPSIDKAKLEKATSVEEALDIARGSLQAAV 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05967 491 Gene3D - 180 309 IPR036188 -
Vivi5g05967 491 PRINTS Pyridine nucleotide disulphide reductase class-I signature 302 316 - -
Vivi5g05967 491 PRINTS Pyridine nucleotide disulphide reductase class-I signature 56 78 - -
Vivi5g05967 491 PRINTS Pyridine nucleotide disulphide reductase class-I signature 212 237 - -
Vivi5g05967 491 PRINTS Pyridine nucleotide disulphide reductase class-I signature 342 349 - -
Vivi5g05967 491 PANTHER APOPTOSIS-INDUCING FACTOR 1 55 477 - -
Vivi5g05967 491 Pfam Pyridine nucleotide-disulphide oxidoreductase 56 372 IPR023753 GO:0016491
Vivi5g05967 491 Gene3D - 392 478 IPR016156 GO:0016491|GO:0050660
Vivi5g05967 491 PRINTS FAD-dependent pyridine nucleotide reductase signature 58 77 - -
Vivi5g05967 491 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Vivi5g05967 491 PRINTS FAD-dependent pyridine nucleotide reductase signature 301 317 - -
Vivi5g05967 491 PRINTS FAD-dependent pyridine nucleotide reductase signature 327 349 - -
Vivi5g05967 491 PRINTS FAD-dependent pyridine nucleotide reductase signature 212 230 - -
Vivi5g05967 491 SUPERFAMILY FAD/NAD(P)-binding domain 43 379 IPR036188 -
Vivi5g05967 491 Gene3D - 58 375 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05967 Vivi-Chr5 164020938 164026083 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05967 163 353 Acyl Lipid Metabolism Gene Families AT1G48030 26.368 9.90e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05967 K08232 - gmx:100819919 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05967 5 164020938 164026083 Vivi5g05967 5 164020938 164026083 ECH