Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05954 ATGGATGTGTTATTGTTGTTACTGTCTCTATTGGTTACTTTGCTAAGCTTGAATGTAGTCGAGAGCCGAAAAACACCGGCTGAGGAGCACTATCTTGAGTACTGTGCTGTGAGCTGCAGAGCTTATAGTGCCTCAGTGACGGAGTTTGGAGCGGTTGGCGATGGACAAACTTTGAACACACGAGCCTTTCAGACGGCCGTGGATCGTCTGAGTCAGTACTCGTCGAACGGCGGGTCTCAGCTTTATGTTCCACCAGGAAGATGGTTGACTGGTAGTTTCAATCTCACCAGTCATTTCACTTTGTTCCTACACAAAGATGCTGTCATTCTTGCCTCTCAGGACGAAAGTGAGTGGCCGGTGATCGAACCTTTACCGTCGTATGGTCGAGGGAGGGACACTCAAGGCGGACGATATAGCAGTCTGATTTTCGGAACCAACCTCACTGATGTAGTCATAACAGGGGACAATGGAACATTAGATGGACAAGGTGAAGTGTGGTGGCAAAAGTTTCATAAGGGGGAGCTTAGTTTTACTAGGCCTTACCTGATTGAAATCATGCACTCGGATGATATTCAGATATCGAATCTCACTCTGGTTAATTCTCCATCCTGGAATATTCATCCGGTTTACAGCAGCAACATTGTTGTTCGAGGCATCACGATTCTCGCTCCTGTGAACTCACCAAATACAGATGGGATCAACCCTGATTCTTGCACGAACACGCGGATTGAGGACTGTTATATAGTGTCCGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAATACGGTATAGCTTATGGAATGCCGACTAAGCAGCTGGTTGTAAAAAGGCTCACTTGTATTTCTCCAACAAGTGCTGTAATTGCTTTAGGGAGCGAAATGTCGGGTGGTATTGAAGACGTAAGGGCTGAGGACATTCTGGCCATTGATTCCGAATCGGGAGTTAGGATCAAAACTGCTATTGGAAGAGGAGGATATGTCAGGGACATATATGTTAGACGGATGACGATGAAAACCATGAAATGGGCGTTTTGGATGACAGGAGATTATGGCTCTCATGCCGATAACAACTATGATCCTAACGCGATTCCTGTGATTCAGAATATTAATTACCGCGATATGGTTGCTGAAAACGTGACCATGGCTGGAAAGTTGGAAGGTATATCTAATGCACCGTTTACCGGAATCTGCATATCCAATGTAACGATTGGACTAGCAAAGAAGGCGAAAAAACTGCCGTGGAATTGTACCAATATCGCCGGGATTTCAAGTGGTGTAACTCCTGTGCCATGTGGCCTATTGCCAGACCAAGGAGTAGAGGATGTTGCAGCATGCAGCTTCCCAGAAGGAAGCTTGCCTATCGAAGAAGACGTTGAGGTTCAAACATGTACTTATAGAATAAATTTGTGA 1416 0.4583 MDVLLLLLSLLVTLLSLNVVESRKTPAEEHYLEYCAVSCRAYSASVTEFGAVGDGQTLNTRAFQTAVDRLSQYSSNGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILASQDESEWPVIEPLPSYGRGRDTQGGRYSSLIFGTNLTDVVITGDNGTLDGQGEVWWQKFHKGELSFTRPYLIEIMHSDDIQISNLTLVNSPSWNIHPVYSSNIVVRGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVVKRLTCISPTSAVIALGSEMSGGIEDVRAEDILAIDSESGVRIKTAIGRGGYVRDIYVRRMTMKTMKWAFWMTGDYGSHADNNYDPNAIPVIQNINYRDMVAENVTMAGKLEGISNAPFTGICISNVTIGLAKKAKKLPWNCTNIAGISSGVTPVPCGLLPDQGVEDVAACSFPEGSLPIEEDVEVQTCTYRINL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05954 471 Pfam Glycosyl hydrolases family 28 134 422 IPR000743 GO:0004650|GO:0005975
Vivi5g05954 471 PANTHER PECTIN LYASE-RELATED 11 457 - -
Vivi5g05954 471 Pfam Pectate lyase superfamily protein 45 102 IPR024535 -
Vivi5g05954 471 SUPERFAMILY Pectin lyase-like 35 436 IPR011050 -
Vivi5g05954 471 Gene3D - 25 426 IPR012334 -
Vivi5g05954 471 FunFam Glycoside hydrolase family 28 protein 29 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05954 Vivi-Chr5 163861196 163863466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05954 32 468 Glycoside Hydrolase AT4G23500 74.828 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05954 - - gmx:100785841 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05954 5 163861196 163863466 Vivi5g05954 5 163861196 163863466 ECH