Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05940 ATGGGATACGGTGAAAAAGGAAGACCATTCAAAAAGCCAAAAGCCTCATCTAAATTCGAAGATTCGAGAAAAGGATTCGCTGAGGAGGACGAAGAGGATGATGCATACGATGATGACGGAAGAACAAAGGATTTTAGCAAATTAGAGTTGAAACCGGATCACACCAATCGTCCTCTTTGGGCTTGTGACAATGGACGGATATTCCTTGAAACTTTCTCGCCTTTGTACAAGCAAGCTTATGATTTTCTCATTGCCATCGCGGAGCCTGTTTGCAGGCCGGAGTCTATGCACGAATATAATCTTACTCCGCATTCGCTGTATGCTGCGGTTTCGGTTGGTTTGGAAACTGAAACGATTATATCGGTTTTGAACAAGTTGTCCAAGACCAAGCTTCCTAAAGAGATGATTAAGTTTATACATGATTCTACTGCAAATTATGGGAAAGTGAAACTTGTTCTTAAGAAGAATCGGTACTTTGTGGAATCTCCATTTCCAGAGGTGTTGAAGACACTGCTCAGGGATGATGCTATAGCTCGAGCAAGGATCATTTCTGAGGGTTCACATGGAGATAAATTTACAATCAGCAAAGCAGCAGGTGAAATTGAAGGCACTCATGACGAGTTGCTAAATGAAGCAGAAGTAGCAGCTGTTGCAGAAGAGAAAGAAACTCATGCATTCGAAGTTGATCCTGCTCAGGTTGAAAATGTAAAGCAACGTTGCTTGCCGAATGCCTTAAATTATCCTATGTTGGAGGAGTATGACTTCAGAAATGATACAGTGAACCCAGACCTTGACATGGAACTAAAGCCTCAAGCACAACCACGGCCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATCATAGTTCTACCTTGTGGTGCTGGAAAGTCCCTAGTTGGTGTTTCAGCAGCTTGCCGGGTAAAAAAGAGCTGTCTTTGTTTGGCAACTAATGCTGTCTCCGTAGATCAGTGGGCTTTTCAGTTTAAACTATGGTCAACTATTCGAGAAGAACAAATATGTCGTTTCACATCTGATAGCAAAGAGAGATTCCGAGGTAACGCTGGAGTTGTTGTGACAACATATAATATGGTTGCTTTTGGGGGAAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATACGAAACAGAGAATGGGGATTGCTGCTTATGGACGAGGTACACGTGGTTCCTGCCCATATGTTTCGAAAAGTCATCAGTATCACTAAATCTCACTGCAAACTTGGGCTCACAGCCACACTTGTGAGAGAGGACGAGCGAATTACAGATCTTAACTTCCTAATTGGTCCCAAATTGTACGAGGCAAATTGGTTAGATCTTGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAGTTTTTTACCGAGTATCTAAAGAAAGAGAACTCCAAGAAGAGACAGGCCCTTTATGTGATGAATCCAAATAAATTCAGAGCATGCGAGTTTCTCATAAATTACCATGAAAGGGCACGTGGCGATAAAATTATAGTTTTTGCTGATAATCTTTTTGCTCTTACCGAATATGCCATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACATGCATTCAAAACTAGCAAAGATGTAAATACTGTTTTTCTTTCCAAGGTTGGTGACAACTCCATCGATATTCCTGAAGCAAATGTTATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCTCAACGTCTTGGTCGTATTCTTAGGGCAAAGGGAAAGCTTCAGGATAGGATGGCCGGTGGCAAAGAGGAGTATAATGCATTTTTTTATTCCCTTGTGTCGACTGATACCCAAGAGATGTATTACTCAACTAAGAGGCAGCAATTTCTAATCGATCAGGGTTACAGCTTTAAGGTAATTACAAGCTTGCCTCCATCTGATGAAGGATCTCGCTTGAACTATCATCATCTCGAAGATCAATTGGCACTTCTTGGAAAGGTACTGAATGCTGGTGATGATGCAGTTGGGTTAGAGCAACTAGAAGAAGATTCCGATGAACTAGCTCTTAAGAGTGCCCGTCGTTCTCAAGGATCGATGAGTGCAATGTCAGGTGCCAAAGGGATGGTCTATATGGAGTACAGTAATGGGCGTAAAGGCCAAATGGTCAAGAGCAAGCCGAAAGATCCAGCAAAGAGACACCACTTATTTAAAAGACGATATGGCACAACCTAA 2283 0.4157 MGYGEKGRPFKKPKASSKFEDSRKGFAEEDEEDDAYDDDGRTKDFSKLELKPDHTNRPLWACDNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTKLPKEMIKFIHDSTANYGKVKLVLKKNRYFVESPFPEVLKTLLRDDAIARARIISEGSHGDKFTISKAAGEIEGTHDELLNEAEVAAVAEEKETHAFEVDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRVKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFTEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILHAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLALLGKVLNAGDDAVGLEQLEEDSDELALKSARRSQGSMSAMSGAKGMVYMEYSNGRKGQMVKSKPKDPAKRHHLFKRRYGTT 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05940 760 FunFam Putative DNA repair helicase rad25 456 698 - -
Vivi5g05940 760 Pfam Type III restriction enzyme, res subunit 273 429 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vivi5g05940 760 Pfam ERCC3/RAD25/XPB C-terminal helicase 455 703 IPR032438 -
Vivi5g05940 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 704 IPR027417 -
Vivi5g05940 760 Gene3D - 456 696 IPR027417 -
Vivi5g05940 760 NCBIfam DNA repair helicase rad25 44 755 IPR001161 GO:0003678|GO:0006289|GO:0006367
Vivi5g05940 760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 447 IPR014001 -
Vivi5g05940 760 Pfam Helicase conserved C-terminal domain 59 182 IPR032830 -
Vivi5g05940 760 FunFam Probable DNA repair helicase RAD25 264 455 - -
Vivi5g05940 760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 668 IPR001650 -
Vivi5g05940 760 PANTHER RAD25/XP-B DNA REPAIR HELICASE 48 730 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 143 162 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 255 281 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 564 582 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 620 643 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 711 730 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 393 413 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 497 512 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 459 481 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 57 77 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 286 308 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 517 539 - -
Vivi5g05940 760 PRINTS Xeroderma pigmentosum group B protein signature 583 608 - -
Vivi5g05940 760 MobiDBLite consensus disorder prediction 734 760 - -
Vivi5g05940 760 MobiDBLite consensus disorder prediction 1 43 - -
Vivi5g05940 760 CDD SF2_C_XPB 466 630 - -
Vivi5g05940 760 Gene3D - 264 455 IPR027417 -
Vivi5g05940 760 CDD DEXHc_XPB 266 435 - -
Vivi5g05940 760 SMART helicmild6 530 608 IPR001650 -
Vivi5g05940 760 MobiDBLite consensus disorder prediction 744 760 - -
Vivi5g05940 760 MobiDBLite consensus disorder prediction 1 25 - -
Vivi5g05940 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 449 IPR027417 -
Vivi5g05940 760 SMART ultradead3 270 451 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05940 Vivi-Chr5 163625665 163634303 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05940 K10843 - gmx:100789550 1377.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05940 5 163625665 163634303 Vivi5g05940 5 163625665 163634303 ECH