Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05929 ATGAATTTGACGATAACTGATTACAAGGTGGAGATGATCAATGATGGCATGCAACACTTCTTTCTCGAATTTCATCAACCTAAATACAGTTTTTATCAAGAAGGTTTGTGGAAGATAAGAGTGGAGCTACCTGATGCTTATCCTTATAAGTCCCCTTCTATTGGTTTTGTCAACAAAATTTACCATCCTAACGTTGATGAAATGTCTGGTTCAGTTTGCTTAGACGTTATTAAACAAACTTGGAGTTCAATATTTGATTTTGTTAATATGTTCCAAGTGTTTCTTCCTCAACTCCTTATAGACCCTAATGCATCAGATCCATTGGATCGTGATGCTGCTGCCTTGATGATGCGAGACCGTGCTGCATATGAACAAAAAGTCAAAGCATTGGAATTCAACCGCAGCACCACCACTGCCACTATCAATTATCAATCATTTTCAGGCTGGCTCAGCAAAACCAATCCAAAGATTGATGGTAATGACGATGAAGAAAAAAATTGTAATACAGATGATGTCTTGTGTATGGAAATTTCTGCGGAGGAAATTCATTCTCGCAAACGCAAACGAGAATCATTATCCGGAATGATAACCTGGATGAGGGAGATTGCAAAACATCCATTTGATCCCGCAGCTAAACCATTACCAGAACCTTCAAAGTGGAAGGGGTGTAAAGGAGGTCAGAACTTCTTTGTTCAGATGCTAAAGGCAAGGGACGTTCTCTCTGTGAGAAAGAATTCAAAACCAAACAGTGGATCATCTTCCCAGAAGGTGAAGATGCATCCTGCCATGTATGAGGATCCTGTTGCTCTTGGTCACCAAGGTGCCAAGAAATTGAGATGTAGTGAAAGGATTTCTAGTGCTGTTAGTTCTCGCTGCACTTGCTGCAGTTTATATGGTAATGGAAATGAATGTCTTCTGGAGAAAACAACCTCCAAACCAGATGTAGCTGGAAAGAAAAAATCCAAGTCATATTGGGATAATGTTCATGAAACACTTGTTTCTATAGGTCATCGTTTCCAAGCGGAAGTCCCAGAATGGACTGGTGTTGCTTCTGAGAGTGACTCTAAATGGTTGGGCACACAAGTATGGCCTGTTAAAGATGATGACTCAAAAGCTACTACTAAAACAGATCTTGCTGGGAGAGGAAGACGAGGTAAGTGTAGCTGCAATGTTCAAGGTTCTGTTCACTGTGTCAGATTTCATATTGCTGAAAACAGGATGAAACTGAAGCATGAATTGGGTTATGTATTTTACCAATGTGGATTTGATCGAACGGGCGAGGGAGTTTCACTTCAATGGACAGCTGAAGAAGAAAAAAAATTTAAGGATTTAATGAGGTTAAATATCCCCTCCGAAAAAAAGGCTTTTTGGAAGAATTTTTGGAACAATACATTCAAAGAATTTCAAATGAAGACAAGAAAAGACATGGTAAACTATTACTTCAATGTTTATCTTATTAAACAAAGAAGCTATCAGAATCGCGTGACTCCAAAGGATGTTGACAGCGATGATGACGGAGACAAATTTGGATCTTTTTGTGATGGATTTGGGAGAAAAGCTCTCAAGCATCCATCTATGGAGTTCATGGAGTGTTCAGAGAACACAGAGTGTTTTGATTTTGAGTAG 1626 0.3924 MNLTITDYKVEMINDGMQHFFLEFHQPKYSFYQEGLWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVIKQTWSSIFDFVNMFQVFLPQLLIDPNASDPLDRDAAALMMRDRAAYEQKVKALEFNRSTTTATINYQSFSGWLSKTNPKIDGNDDEEKNCNTDDVLCMEISAEEIHSRKRKRESLSGMITWMREIAKHPFDPAAKPLPEPSKWKGCKGGQNFFVQMLKARDVLSVRKNSKPNSGSSSQKVKMHPAMYEDPVALGHQGAKKLRCSERISSAVSSRCTCCSLYGNGNECLLEKTTSKPDVAGKKKSKSYWDNVHETLVSIGHRFQAEVPEWTGVASESDSKWLGTQVWPVKDDDSKATTKTDLAGRGRRGKCSCNVQGSVHCVRFHIAENRMKLKHELGYVFYQCGFDRTGEGVSLQWTAEEEKKFKDLMRLNIPSEKKAFWKNFWNNTFKEFQMKTRKDMVNYYFNVYLIKQRSYQNRVTPKDVDSDDDGDKFGSFCDGFGRKALKHPSMEFMECSENTECFDFE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05929 541 Gene3D Ubiquitin Conjugating Enzyme 1 141 IPR016135 -
Vivi5g05929 541 SUPERFAMILY UBC-like 7 130 IPR016135 -
Vivi5g05929 541 Pfam Ubiquitin-conjugating enzyme 7 129 IPR000608 -
Vivi5g05929 541 FunFam ubiquitin-conjugating enzyme E2 H isoform X2 2 145 - -
Vivi5g05929 541 SMART ELM2_2 333 384 IPR000949 -
Vivi5g05929 541 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 177 535 - -
Vivi5g05929 541 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 61 77 IPR023313 -
Vivi5g05929 541 SMART ubc_7 1 136 - -
Vivi5g05929 541 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 136 IPR000608 -
Vivi5g05929 541 CDD UBCc 8 128 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05929 Vivi-Chr5 163562529 163586250 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05929 - - psat:127100343 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05929 5 163562529 163586250 Vivi5g05929 5 163562529 163586250 ECH