Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05913 ATGTGGTTTCTTGGTTGGAAAGGACCGTCGGGTTTCTCAGCTTCTTCAACCGCCGATCAAGTTACCCACGGAATCGATGGAACCTCTCTCACTGCCATCGTCACAGGAGCAACAAGTGGTCTTGGCTTGGAAACAACCAGGGTTCTTGCTTTGCGTGGTGTTCATGTTGTTATGGCTGTGAGGAATGTGAATAATGGTGTTGATATTAAAGAAACGTTGCTTAAGGAAATTCCTGCAGCTAGAATTGATGTTTTTCAGTTAGATCTCAGCTCCTTGGCGTCTGTTAGGAAATTTGCATCCGATTTTAATTCCTCCGGTCTGCCACTCAATATTCTAATTAACAATGCAGGGCTGATGGCTACTCCATTCATGCTTTCTCAAGACAATATTGAATTGCAGTTTGCAACCAATCATTTAGGCCATTTTCTGTTGACAAACCTTTTATTAGAGACTATGAAAAAAACGGTAAGGGAAAGCAACCGGGAAGGAAGGATAGTTATTGTATCATCGGAGGCTCACAAATTTGCATATAGTGAAGGGATTCGTTTTGATAAGATCAACAATGAATCTGAATACAGCAGTTATTTTGCTTATGGACAATCGAAACTTGCGAATATTTTGCATGCCAATGAGCTTGCAAGGCGCTTAAAGGAAGAAGCGGTGCAAATAACAGTTAACTCTCTTCATCCTGGTACAATTATAACAAATATTCTGCGGCACCATGGTTATTTTAATGCCGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAGGGAGCTGCAACTCAATGTTATCTTGCATTGCACCCACAGGTCAAGGGAATATCTGGGGAGTACTTTGCTGATAGTAATAAGGCAAACCCAACCACTTTAGCTAAAGATACAGAGCTGGCACAAAAACTATGGGAATTAAGTGTAAGTTTGTCTAATACGAAGTAG 948 0.4093 MWFLGWKGPSGFSASSTADQVTHGIDGTSLTAIVTGATSGLGLETTRVLALRGVHVVMAVRNVNNGVDIKETLLKEIPAARIDVFQLDLSSLASVRKFASDFNSSGLPLNILINNAGLMATPFMLSQDNIELQFATNHLGHFLLTNLLLETMKKTVRESNREGRIVIVSSEAHKFAYSEGIRFDKINNESEYSSYFAYGQSKLANILHANELARRLKEEAVQITVNSLHPGTIITNILRHHGYFNAVANMVGKYFLKNVQQGAATQCYLALHPQVKGISGEYFADSNKANPTTLAKDTELAQKLWELSVSLSNTK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05913 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vivi5g05913 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Vivi5g05913 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Vivi5g05913 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vivi5g05913 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vivi5g05913 315 Pfam short chain dehydrogenase 31 178 IPR002347 -
Vivi5g05913 315 CDD retinol-DH_like_SDR_c_like 31 305 - -
Vivi5g05913 315 PANTHER RETINOL DEHYDROGENASE 9 311 - -
Vivi5g05913 315 Gene3D - 26 315 - -
Vivi5g05913 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 287 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05913 Vivi-Chr5 163326892 163329506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05913 33 291 Acyl Lipid Metabolism Gene Families AT3G55290 27.106 1.02e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05913 - K19329 gmx:100785176 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05913 5 163326892 163329506 Vivi5g05913 5 163326892 163329506 ECH