LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g05900	ATGGTTACTCGACGCTTCAATCAACTACCAATCAGCGACGACGAAGAAGAAGACGATTCACCTCCTTCCAAGCCACACTCCACTTCAACCAACTTCGTCCACGATAACGCTTCCAACCACCGCAAAAGGAAGGTGCTCAACCTTCAAGACGAGGACGACGACGACGAAGAAGAAGACGAGGCGTCGAACGCGAACGAGAAAAAGATGAAGTTGAATGACGATGATGATGATGTTGAGGAGGAAGAGGAAGCGTCTAGTGAAGAAGAGGAAGCGCCATTGGACGATGCTAAACCTGTTGGTGGACCGGTTAGGGTTTCCGGAAAAGGAAATGGCAGGAAGAGTCATTATCATTCGTTTGAATTCGACAATAACCTATACTCACTCGAGGATCCGGTGCTTCTTGTGCCAGAGGGCAAAGATCAAAAACCATATGTGGCTATTATTAAGGACATTACACAATCTGTAGATGGCAGCTTGAAGATCATGGGGCAGTGGTTTTACCGGCCAGATGAAGCGGACAAAAAGGGAGGTGGTACCTGGCAAGCTAGTGACGGCAGAGAGCTGTTTTATAGTTTCCACCAGGATGAGGTTCCTGCGGAATCTGTTATGCATAGGTGTGTGGTGCATTTCGTCCCCATACACAAACAGCTTCCAAATCGTAAGGAGCATCCTGGGTTTATTGTGCAAAAGGTTTATGACACGGTAGAAAGGAAATTGTGGAAGCTTACCGATAAAGACTATGAGGACAATAAGCAAGAAGAAATTGATGAGCTTGTTCATAAAACTTTTCAATGTTTGGGTGAGCTACCTGACATCGAGATTGATGAAGCTCCTGCTGATCAGGAAGATTTGATTAGAGATAAAAGAATCTTAAAGAAAAAGAGTATTTCACCTCTTGATGTTTCAAGAGAGGACAGAACATCTCGAAGGAGTGTCCAACCTCTGAAACCTGAAACACCAAAGACTTGTTTAGCTAATACCTCAGAGCCTCATTATCGTATATTAGTGAGTTTTAATGTATTAACAGGTGATAAATATCGCGACCAAGGTTTGGTGAAGTTGCTTAAAAGTGTTCAGTACTTGTTTGATACTGATGACATCAGAAAGAAAAAAGACAAATGCAGTGACAGTTCTGATGCAATCAACAATGGAGGCAGCAACAAAAGTTTAGAAATAGAAAATATAGCCAAAGTTCTGAAGGATTCCAAGTCTTTTATCTGGCCAGATGTTGCTGTTCCAGCTGTAGTTGCTCTAGAGAAGGCTTCACATGAAGCATTTCCATCAGATTCTCAGAGATACAGCCAAAAACTACGACAATTAGCATTTAATCTCGAGAGCAATGCATTTTTGTTATGCCGTTTATTAAAGGGAGAGCTTGAACCTTCTAAAATATTGACTATGACACCTACTGAATTGAAGGAGGGTTTGACTGCTGATGAAACATCCAAGGATGAACCCGAGGAGCCACAACACATGCAGATGACGGATACACGCTGCGAGCGCTGCTCAGAGCGTAAGGTGGGCGTGAAGGATATTATTCGCGCAGGACGCGCTGATAGATATATGCTGGAATGTATCGAATGTGGTCATTCCTGGTCTGCCTCGCGTGATGCGGTGTCCATGCTGACATTAGATGCATCAGATTCAAAAAGAAACGTAGGCACAGCCCCATGGGCAACTGCAAAATTTGAAAATGTCGAGAAGAAGCTGGTGAGTCCGCGTGAAACTGACAAGTCAAGCAATGACATCTTTATGCCGCCTGTATTGGAAAGCCATAAATCATTTGGCAAGTCCAGGAAAGATCAAAACATGGAAGCTTCAAAACGTGCTGACTAG	1836	0.4363	MVTRRFNQLPISDDEEEDDSPPSKPHSTSTNFVHDNASNHRKRKVLNLQDEDDDDEEEDEASNANEKKMKLNDDDDDVEEEEEASSEEEEAPLDDAKPVGGPVRVSGKGNGRKSHYHSFEFDNNLYSLEDPVLLVPEGKDQKPYVAIIKDITQSVDGSLKIMGQWFYRPDEADKKGGGTWQASDGRELFYSFHQDEVPAESVMHRCVVHFVPIHKQLPNRKEHPGFIVQKVYDTVERKLWKLTDKDYEDNKQEEIDELVHKTFQCLGELPDIEIDEAPADQEDLIRDKRILKKKSISPLDVSREDRTSRRSVQPLKPETPKTCLANTSEPHYRILVSFNVLTGDKYRDQGLVKLLKSVQYLFDTDDIRKKKDKCSDSSDAINNGGSNKSLEIENIAKVLKDSKSFIWPDVAVPAVVALEKASHEAFPSDSQRYSQKLRQLAFNLESNAFLLCRLLKGELEPSKILTMTPTELKEGLTADETSKDEPEEPQHMQMTDTRCERCSERKVGVKDIIRAGRADRYMLECIECGHSWSASRDAVSMLTLDASDSKRNVGTAPWATAKFENVEKKLVSPRETDKSSNDIFMPPVLESHKSFGKSRKDQNMEASKRAD	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g05900	611	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	30	605	-	-
	Vivi5g05900	611	MobiDBLite	consensus disorder prediction	1	111	-	-
	Vivi5g05900	611	MobiDBLite	consensus disorder prediction	75	90	-	-
	Vivi5g05900	611	MobiDBLite	consensus disorder prediction	474	497	-	-
	Vivi5g05900	611	MobiDBLite	consensus disorder prediction	301	321	-	-
	Vivi5g05900	611	Gene3D	-	339	474	IPR036575	GO:0006351
	Vivi5g05900	611	ProSiteProfiles	BAH domain profile.	124	243	IPR001025	GO:0003682
	Vivi5g05900	611	MobiDBLite	consensus disorder prediction	476	497	-	-
	Vivi5g05900	611	SUPERFAMILY	Elongation factor TFIIS domain 2	393	473	IPR036575	GO:0006351
	Vivi5g05900	611	SMART	mid_6	387	482	IPR003618	GO:0006351
	Vivi5g05900	611	Gene3D	-	108	332	IPR043151	-
	Vivi5g05900	611	ProSiteProfiles	TFIIS central domain profile.	346	500	IPR003618	GO:0006351
	Vivi5g05900	611	MobiDBLite	consensus disorder prediction	570	611	-	-
	Vivi5g05900	611	MobiDBLite	consensus disorder prediction	593	611	-	-
	Vivi5g05900	611	Coils	Coil	54	81	-	-
	Vivi5g05900	611	Pfam	BAH domain	125	241	IPR001025	GO:0003682
	Vivi5g05900	611	CDD	BAH_plant_3	106	252	-	-
	Vivi5g05900	611	SMART	BAH_4	124	243	IPR001025	GO:0003682
	Vivi5g05900	611	Pfam	Transcription factor S-II (TFIIS), central domain	342	488	IPR003618	GO:0006351

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g05900	Vivi-Chr5	163204946	163209647	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g05900	-		-	cam:101501082	831.247

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi5g05900	5	163204946	163209647	Vivi5g05900	5	163204946	163209647	ECH