Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05898 ATGGTTGATTCAATTGCTGCAACTTCGATTCTCGGGTACGGTCCGGTTTGCGGTGGAAATTTGATTAGGGATGTGAATGGAAAGAGGAAATCTTTCAACACTTGCCGTTTTTTTCCACCAGCTGAGTTTCTTGGTGGGAAGGTTGTTGTTTCACTGCCTTTGGTTAAGTCGAAGCGAGACGGGTTCTTGTTGTCTTCGCCGATTAAGGCTCTTGCGGTGGAGCTTACGAGAGAAGCGTATGCCTATAGGGAGGATAGATTGCCGAAGAAAGGGAATAGTAAGATTGACGGTGGGTTTGATCGGAGGCCTGATATGTGGCCACCGGAGAATCGAGCGGATAAGCCTTCACTTAGGAACCCGTTGCTTCGACAAGAGAGGATGGGATGTGGTTGGCTGGGGGCTATATTTGAGTGGGAGGGGGTTCTTATTGAAGATAATCCGGATTTAGAGAAGCAGGCTTGGCTTGCGCTTGCGCAAGAGGAAGGAAAACCATCACCTATGGCTTTTGTGATCAAGAGAATTGAAGGTATGAAGAGTGAGCAGGCAATTTCTGAAGTGTTGTGTTGGTCTAGGGACCGGACTGAGCTGAGAAGAATGGCGAATAGAAAGGAAGAAATCTACCAAGCTTTACAAGGTGGGATATATAGTTTCATGCCTGGATCTAAAGAGTTTGTCGGTGTTTTGATGCATTATAAGATACCGATGGCTTTGGTTTCTACACGACCTAGAAAAATTATCGAGTCTGCTATGGGGGAGATTGGTATTGTTGGAAATTTCAATGTTATTGTTGCGGCCGAGGATGTTCACAGGGGAAAGCCTGATCCAGAAATGTTTGCATATGCAGCGCAGCTTTTGAACTTCATACCTGAAAGGTGCATTGTGTTTGGAAACTCAAATTTAACAGTGGAGGCTGCGCATGATGCACAGATGAAGTGTGTTGCGGTTGCTAGCAAGCATCCTGTGTATGAGCTTAGGGCTGCAGACTTGGTTGTGAGGCGTTTGGATGAGCTTTCAGTGGTTGATTTGAAGAAATTGGCAGACATTGAAACATCTGAATTTGGGTCTCCACAGCCTCAGATGGAGTTGGAAGAGGATGATGATATATCATCGGATGACGACAGTTTCTGGTAA 1131 0.4571 MVDSIAATSILGYGPVCGGNLIRDVNGKRKSFNTCRFFPPAEFLGGKVVVSLPLVKSKRDGFLLSSPIKALAVELTREAYAYREDRLPKKGNSKIDGGFDRRPDMWPPENRADKPSLRNPLLRQERMGCGWLGAIFEWEGVLIEDNPDLEKQAWLALAQEEGKPSPMAFVIKRIEGMKSEQAISEVLCWSRDRTELRRMANRKEEIYQALQGGIYSFMPGSKEFVGVLMHYKIPMALVSTRPRKIIESAMGEIGIVGNFNVIVAAEDVHRGKPDPEMFAYAAQLLNFIPERCIVFGNSNLTVEAAHDAQMKCVAVASKHPVYELRAADLVVRRLDELSVVDLKKLADIETSEFGSPQPQMELEEDDDISSDDDSFW 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05898 376 MobiDBLite consensus disorder prediction 351 376 - -
Vivi5g05898 376 Gene3D - 134 332 IPR023214 -
Vivi5g05898 376 Gene3D Putative phosphatase; domain 2 144 217 IPR023198 -
Vivi5g05898 376 MobiDBLite consensus disorder prediction 359 376 - -
Vivi5g05898 376 NCBIfam HAD-IA family hydrolase 203 315 IPR006439 -
Vivi5g05898 376 MobiDBLite consensus disorder prediction 92 113 - -
Vivi5g05898 376 CDD HAD_BPGM-like 195 317 - -
Vivi5g05898 376 PANTHER 5-AMINO-6-(5-PHOSPHO-D-RIBITYLAMINO)URACIL PHOSPHATASE, CHLOROPLASTIC 1 370 - -
Vivi5g05898 376 SUPERFAMILY HAD-like 134 337 IPR036412 -
Vivi5g05898 376 Pfam Haloacid dehalogenase-like hydrolase 147 315 IPR041492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05898 Vivi-Chr5 163190744 163192638 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05898 K22912 - gmx:100798181 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05898 5 163190744 163192638 Vivi5g05898 5 163190744 163192638 ECH