Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05869 ATGGAGGAAGCTTCATCAATTGCACCGCCACCTCCTAAACCATCGTGTTGGAGCAGCATAGTGAAGAAGGAGGCACCGCCACCTCAACAGCCGCCGCCACTTTTGGAGACTCAACAAGTTTTGGAAGATGCGCGTAACCGTCATGGGATATCTGTTGCCATTGTTGATGCTAATGCTGTTATTGCAGGTGGAGAGAAGCTTCATGGTATTGCTGATAAGTTTGTTTCTGTCCCGGAGGTTTTGGAGGAAATCCGTGATCCTGTTTCTCGCCACAAGCTTTCTTTTCTTCCGTTTACTATCCAAACTATGGAACCCACCCCTGAATCCATTAACAAAGTTGTCAAATTTGCTAGGGTTACTGGTGATTTACAGACTCTATCAGATGTTGATATCAAACTCATGGCTCTAACATATACTTTGGAGGCTCAAATTCACGGAACAAAACATCTCAGAGAAAGCCCGCCTCCAGTGCAAACCTTAAATGTTAAGAGGTTGCCTGAGAAGGACTTGCCCGGATGGGGTTCGAATGTTTCCAATTTGGAAGAGTGGGAAGCATTGGAACGCGAAGAGGATAATGCAAATTCAAATTCAAGAATCCTTCCTCTGCAGGACTTGAGTTTGAACATTGTTCCTCAAGATGATATCTCTGTAGATGGTTCAGTAGAACATGCTAGTGAAACTACCTTGGAAATTCTAGATGGTAGTGAACATGGTGGTTCAACGAGGCGTAAGAATTATCAGCCTAAGAAAAAAGTCATAAACATTGAAGGGAAGATAGTGGCTGATGGTGTTGATGCATCTCAAGGGCAAGTTGATGACAATGAAGGTGATTGGATGCCTGCTGTTAGTCGTAGTACTCACAGGAGATTTCTAAGAAGGAAAGCTAGACGAGAACACTATGATGCATTATCCAGTAATCAAGATCAACAAGATATGGAAGAAACCATCGATGGAAGTGTTTGTGAAGATGACAAGGCTTCAAACCGTGATGAGAACCATATTGAAAATGTTGTTTCCAAGGATGATATGATATCTGCAGAGAACAATGACGGGGAAGCCCTCTCTGCAACTCTGGAGCAAATGACTCTGGAAAAAGGTTCACTTGAAGTTAACGAAGAACACAAACCAAGTTTGTCTCCTGAAGAGCTGCAGTCAAACAATGATATGGAAAGTGCATCGGATGTTAGTGCATTTCACTCCGAGATTGCAAGTCAGACAAGTGAAGCTGCTGATGCTTCATATGCAGATGATGATGTCAGTGAACAAAGTTGGATGCTTAGATCTTTGTCTGAATCATCTGTGGCCTGTATAACCGGTGATTTTGCAATGCAAAATGTTCTTCTCCAAATGGGTTTGCGCTTGCTGGCACCTGGAGGATCACAGATACACCAGCTGCATAGGTGGATACTTAAGTGTCATGCTTGCTTCACTGTTACTGCTGAAATTGGGAGGATTTTCTGTCCAAAATGTGGAAATGGTGGCACCTTAAGGAAGGTAGCTGTCACTGTTAATGAAAATGGAATAATGTTGGCAGCCCGTCGACCCCGAATTACATTACGTGGCACAAAGTTCTCATTGCCTTTACCACAAGGAGGAAGGAATGCAGTCACAAAAAACGTTATTCTCCGTGAAGATCAACTCCCTCAAAGGGTACTTCATCCTAAAACAAAGAAGAAATCCAACAAGGATGATGAGTTCTTTGGGCCAGACGATGTCTTCAGCCACCACAATTCTAAAGGATCTCCGTTCCTGCCTCCTGTAAGGAAAGCACTAGCAGTTTACAGTGGGAAGAGAAATCCAAATGACAATCACTACTCTTCAAAGCGGAAGTAG 1833 0.4332 MEEASSIAPPPPKPSCWSSIVKKEAPPPQQPPPLLETQQVLEDARNRHGISVAIVDANAVIAGGEKLHGIADKFVSVPEVLEEIRDPVSRHKLSFLPFTIQTMEPTPESINKVVKFARVTGDLQTLSDVDIKLMALTYTLEAQIHGTKHLRESPPPVQTLNVKRLPEKDLPGWGSNVSNLEEWEALEREEDNANSNSRILPLQDLSLNIVPQDDISVDGSVEHASETTLEILDGSEHGGSTRRKNYQPKKKVINIEGKIVADGVDASQGQVDDNEGDWMPAVSRSTHRRFLRRKARREHYDALSSNQDQQDMEETIDGSVCEDDKASNRDENHIENVVSKDDMISAENNDGEALSATLEQMTLEKGSLEVNEEHKPSLSPEELQSNNDMESASDVSAFHSEIASQTSEAADASYADDDVSEQSWMLRSLSESSVACITGDFAMQNVLLQMGLRLLAPGGSQIHQLHRWILKCHACFTVTAEIGRIFCPKCGNGGTLRKVAVTVNENGIMLAARRPRITLRGTKFSLPLPQGGRNAVTKNVILREDQLPQRVLHPKTKKKSNKDDEFFGPDDVFSHHNSKGSPFLPPVRKALAVYSGKRNPNDNHYSSKRK 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05869 610 CDD PIN_Nob1-like 54 165 IPR033411 -
Vivi5g05869 610 PANTHER RNA-BINDING PROTEIN NOB1 38 609 IPR039907 -
Vivi5g05869 610 MobiDBLite consensus disorder prediction 368 395 - -
Vivi5g05869 610 Gene3D - 44 159 - -
Vivi5g05869 610 FunFam 20S-pre-rRNA D-site endonuclease NOB1 44 164 - -
Vivi5g05869 610 MobiDBLite consensus disorder prediction 1 34 - -
Vivi5g05869 610 PIRSF Nob1 36 610 IPR017117 GO:0000469|GO:0004521|GO:0042274
Vivi5g05869 610 MobiDBLite consensus disorder prediction 553 585 - -
Vivi5g05869 610 MobiDBLite consensus disorder prediction 321 345 - -
Vivi5g05869 610 MobiDBLite consensus disorder prediction 321 340 - -
Vivi5g05869 610 Pfam PIN domain of ribonuclease 54 140 IPR033411 -
Vivi5g05869 610 Gene3D - 456 530 IPR036283 -
Vivi5g05869 610 SUPERFAMILY NOB1 zinc finger-like 462 525 IPR036283 -
Vivi5g05869 610 Pfam Nin one binding (NOB1) Zn-ribbon like 462 532 IPR014881 -
Vivi5g05869 610 MobiDBLite consensus disorder prediction 553 572 - -
Vivi5g05869 610 MobiDBLite consensus disorder prediction 380 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05869 Vivi-Chr5 162865079 162868628 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05869 K11883 - gmx:100800291 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05869 5 162865079 162868628 Vivi5g05869 5 162865079 162868628 ECH