Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05789 ATGTCGAGTCACGGTGGTTCTTCGCGAAAGAGTGGTTCGTTCTCGACTAGCCCTGCGCGGTCTAAGAAGAAGGGATCTGAATTTTCACCCCCGGATCCCAGTTTTCGTAAATTTCCATCTATGCGCTCCACCACCGCGGGTGAGCGAACTGTGAAATCATTGCGACTTTCAAAGGCACTGACAGTGCCTGAAACAACAACTATCTATGAAGCTTGCCGTCGGATGGCTGCTCGCAGAGTAGATGCTCTATTATTAACTGATGCTAATGCTTTGCTCTGTGGAATCCTTACAGACAAGGATATAATGACAAGAGTAATTGCCTCTGAGATTAATCTTGAAGACACACCTTGTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTACCGACACTCTTGCTGTGGAAGCTCTCCAAAAAATGGTGCAAGGGAGATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTGGTTGCTATCCTTGACATAGCAAAGTGTTTATATGATGCCATTGCCCGTATGGAAAGGGCTGCGGAGAAAGGAAAGGCAATTGCAGCGGCTGTTGAAGGCTCCACCAATTCATCATTCTATGAGACTCTTCGGGAGCAGATATTTAAGCCATCATTGTCTACAATCATTCCTGAGAATTCAAACGTTGTTACAGTCTCATCAAGAGACTCAGTTTTGACAACAACAAAAAGGATGCTTGAACTCCGTACAAGTGCTGCTGTTGTGGTAGTTGATAACAAACCTTGTGGTATCCTTACTTCAAAGGATATCTTGATGCGGGTAATAGCACAAAATCTCTCCCCATCATCAACTCTTGTTGAAACGGTCATGACTGTAAATCCAGAATGTGCAATAATCGACACACCAATTGTTGATGCACTTCACTTAATGCATAATGGAAAATTCTTGCATCTTCCTGTGGTTGATAGAGATGGCATTGTTGTTGCTACGGTTGATGTCATTCATATCACTCATGCTGCTGTGGCTACAGCTAGTCAGGCTGGGAATACTGCTAATCTGAACAATGAAGCTGCCAACAGCATGATACAAAAGTTTTGGGATTCGGCCATGGCCTTGACTCCAAATGACGATGAAGAAGATTCACAAAGCGACACTTCCTTTAAATTGGTTTCTGAGGGAGGAGAAACAGGGAGGTCCATTCCTTATAATATGTCAAGCACGCAAACCACATTTTCCTTCAAACTACAAGATAAGAAGGGTAGATTGCATAGATTCTCATGTGATACTCGGAGCTTGACAGAGGTTATAACTTCCATCATTCAGAGAGTTGGCGATGATATTGACACCAAGAACCTGCCCCAAATTTTGTATGAAGATGAAGAACACGATCAAGTTGTATTGGCTTCAGATAGTGATCTTGCAGCAGCCGTGGACCATGCAAAGACGGCTGGTTTGAAGGGTTTGAGATTGCACTTAGACTACTCAGGAGCACATGGTTACGGAGCAGAATCAAATTTAAATTTGGAACATGCTAATTCAGAAGCATGGGCCTCGGCATTTCACACTGTTGCAGCTGGAGCAGCAGTTATCGCTGCCTTAGGCCTATTAGCGTTCTTCAGGCGAAGGCATTAG 1602 0.4388 MSSHGGSSRKSGSFSTSPARSKKKGSEFSPPDPSFRKFPSMRSTTAGERTVKSLRLSKALTVPETTTIYEACRRMAARRVDALLLTDANALLCGILTDKDIMTRVIASEINLEDTPCSKVMTRNPVFVLTDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGSTNSSFYETLREQIFKPSLSTIIPENSNVVTVSSRDSVLTTTKRMLELRTSAAVVVVDNKPCGILTSKDILMRVIAQNLSPSSTLVETVMTVNPECAIIDTPIVDALHLMHNGKFLHLPVVDRDGIVVATVDVIHITHAAVATASQAGNTANLNNEAANSMIQKFWDSAMALTPNDDEEDSQSDTSFKLVSEGGETGRSIPYNMSSTQTTFSFKLQDKKGRLHRFSCDTRSLTEVITSIIQRVGDDIDTKNLPQILYEDEEHDQVVLASDSDLAAAVDHAKTAGLKGLRLHLDYSGAHGYGAESNLNLEHANSEAWASAFHTVAAGAAVIAALGLLAFFRRRH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05789 533 SUPERFAMILY CBS-domain pair 48 164 IPR046342 -
Vivi5g05789 533 MobiDBLite consensus disorder prediction 1 49 - -
Vivi5g05789 533 Pfam PB1 domain 400 483 IPR000270 GO:0005515
Vivi5g05789 533 CDD CBS_pair_MUG70_1 56 172 - -
Vivi5g05789 533 ProSiteProfiles CBS domain profile. 121 179 IPR000644 -
Vivi5g05789 533 SMART cbs_1 124 168 IPR000644 -
Vivi5g05789 533 SMART cbs_1 58 106 IPR000644 -
Vivi5g05789 533 SMART cbs_1 283 331 IPR000644 -
Vivi5g05789 533 SMART cbs_1 218 265 IPR000644 -
Vivi5g05789 533 Pfam CBS domain 57 103 IPR000644 -
Vivi5g05789 533 Pfam CBS domain 119 161 IPR000644 -
Vivi5g05789 533 Pfam CBS domain 216 262 IPR000644 -
Vivi5g05789 533 Pfam CBS domain 276 327 IPR000644 -
Vivi5g05789 533 ProSiteProfiles PB1 domain profile. 398 485 IPR000270 GO:0005515
Vivi5g05789 533 MobiDBLite consensus disorder prediction 376 392 - -
Vivi5g05789 533 CDD CBS_pair_MUG70_2 216 332 - -
Vivi5g05789 533 SUPERFAMILY CBS-domain pair 217 330 IPR046342 -
Vivi5g05789 533 ProSiteProfiles CBS domain profile. 55 115 IPR000644 -
Vivi5g05789 533 ProSiteProfiles CBS domain profile. 280 338 IPR000644 -
Vivi5g05789 533 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 27 471 - -
Vivi5g05789 533 SUPERFAMILY CAD & PB1 domains 395 488 - -
Vivi5g05789 533 Gene3D - 36 186 IPR046342 -
Vivi5g05789 533 Gene3D - 189 343 IPR046342 -
Vivi5g05789 533 CDD PB1_MUG70 401 485 - -
Vivi5g05789 533 SMART PB1_new 400 485 IPR000270 GO:0005515
Vivi5g05789 533 MobiDBLite consensus disorder prediction 1 23 - -
Vivi5g05789 533 MobiDBLite consensus disorder prediction 363 392 - -
Vivi5g05789 533 ProSiteProfiles CBS domain profile. 212 272 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05789 Vivi-Chr5 161782294 161788686 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05789 - - gmx:100783514 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05789 5 161782294 161788686 Vivi5g05789 5 161782294 161788686 ECH
Vivi3g02184 3 36054471 36061578 Vivi5g05789 5 161782294 161788686 PCT