Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05777 ATGAGTCTAATTTGCAGCATACTCAATGTAGCATTGCCTCCATTGTCATTGATTTTACTGCCTATCATCATGCTACCTTATCTTTTCTTCAAATTGCTTATACATCTAAAAAAATTGGTGTACAAAGAAAACATGGCAAGAAAAGTAGTACTAATCACAGGGGCAGCATCAGGAATTGGGGAGCAATTAGCTTATGAATATGCGAGAAAAGGAGCAAAATTGTCCCTTGTTGACATTAGAGAGGAGAATCTAGTAGTAGTAGCCGAGATGGCAAGATCTCTTGGTTCTCCGGATGTTATCAATATTGGTGCAGATGTTTCTGTCGTTCAAGACAGCAAACGATTTGTTGATGAAACAATAGACCACTTCGGACAATTGGATCATCTCGTAAATAATGCAGGAATTGGTGGAATTCCAAAATTAATAGAGGATTGTTCTGATGCTACTAAATATACTTCAATTATAGATATAAATTTCTGGGGAACAGTTCATGGCACTTTACATGCAATCCCACATCTCAAAAAGAGTAAAGGCAGGATCATAGTAATTGCTTCAGGTTGTGGATGGTTCCCACTTCCAAGACTCAGTCCCTATAATGCTAGTAAGGCAGCGGTAATAAGTTTCTTTGAGACACTAAGAATTGAACTTGGTTGGTGTATTGGCATAACAATTGTCACTCCTGGTTTTGTCAAAACAAAACTAGCATCAAAGGCTTATAAAGATGAGCCTAGTCTGAGAATAATTCCAATGGGGTCAGCATTTGAATGTGCCAAAGACATAGTGAATGGTGCATGTAGGGGAGATATGTATGTGACAAGTCCTTCATGGGTGAAAGTGTTGTTTCCTTTTAAGGTGCTTTATCCTGAGTTGGTGGATTGGGTTCAACAACACATCTTTGGGCTTTTGCCAAACCATTCTTGTGAGAAGGATAATCTGCATATGTCTAAGAATAGTCAAGTGTTTAAGAGTCATTAA 975 0.3815 MSLICSILNVALPPLSLILLPIIMLPYLFFKLLIHLKKLVYKENMARKVVLITGAASGIGEQLAYEYARKGAKLSLVDIREENLVVVAEMARSLGSPDVINIGADVSVVQDSKRFVDETIDHFGQLDHLVNNAGIGGIPKLIEDCSDATKYTSIIDINFWGTVHGTLHAIPHLKKSKGRIIVIASGCGWFPLPRLSPYNASKAAVISFFETLRIELGWCIGITIVTPGFVKTKLASKAYKDEPSLRIIPMGSAFECAKDIVNGACRGDMYVTSPSWVKVLFPFKVLYPELVDWVQQHIFGLLPNHSCEKDNLHMSKNSQVFKSH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05777 324 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 185 213 IPR020904 GO:0016491
Vivi5g05777 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Vivi5g05777 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Vivi5g05777 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Vivi5g05777 324 Gene3D - 33 302 - -
Vivi5g05777 324 Pfam short chain dehydrogenase 48 242 IPR002347 -
Vivi5g05777 324 PANTHER RETINOL DEHYDROGENASE-RELATED 45 295 - -
Vivi5g05777 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 299 IPR036291 -
Vivi5g05777 324 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Vivi5g05777 324 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Vivi5g05777 324 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Vivi5g05777 324 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Vivi5g05777 324 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05777 Vivi-Chr5 161544640 161546591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05777 49 251 Acyl Lipid Metabolism Gene Families AT1G24360 31.731 2.38e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05777 K22418 - gmx:100808990 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05777 5 161544640 161546591 Vivi5g05777 5 161544640 161546591 ECH