Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05776 ATGAGTGCAATTTCCAACATACTCAATGTAGTATTGCCCCCATTGTCACTGATTATACTGCCTATCATCATGCTACCTTATCTTTTCTTCAAATTGCTTATACATCTAAAAAAATTGGTGTACAAAGAAAACATGGCAAGAAAAGTAGTACTAATCACAGGGGCAGCCTCAGGAATTGGGGAGCAATTGGCTTATGAATATGCTAGACGAGGAGCGAGGCTGTCTCTTGTTGACATTAAAAAGGAGAATCTTGCAGCAGTGGCTAAAATGGCAAGATCTCTTGGTTCTCCCGATGTTATCGTCATTGGTGCTGATGTTTCCAACATTCAAGAAAGTAAACGATATGTTGATGAAACGGTGGACCACTTTGAACAACTGGATCATCTTGTAAATAACGCTGGAATAGCAATTCCGACGTTGATAGAAGATTGTTCTGATATTACTAAATACACTCCAGTTATAGATGTAAATTTCTGGGGAGCAGTTCATGGGACTTTACATGCAATCCCACATCTCAAAAAAAGTAAAGGAAGGATCATAGTGATTGCTTCAACTTGTGGATGGTTCCCTCTTCCAAGATCCAGTTTCTATAATGCTAGTAAGGCAGCATTAATAAGTTTCTTTGAGACACTAAGAATTGAACTTGGTTGGTGTATTGGCATAACAATTGTCACACCAGGATTTATCAAAACAGAACTAGCATTGAAGGCTTATGAAGAAAGGCCTAGTCTGAAAATGATTCCAATGGGGTCAGCATTTGAATGTGCCAAAGACATAGTGAAAAGTGCATGTAGGGGAGATATGTATGTGACAAATCCTTCATGGGTCAAAGTGTTGTTTCCTTTTAAGGTGTTCTATCCTGAGCTGGTGGACTGGGTCCAACAACACATCTTTCGACTTTTGCCCAACCCTTGTAAGAAAGGCAATAGGCATATGTACAAGAATAACCAAAGAGCATAA 960 0.3917 MSAISNILNVVLPPLSLIILPIIMLPYLFFKLLIHLKKLVYKENMARKVVLITGAASGIGEQLAYEYARRGARLSLVDIKKENLAAVAKMARSLGSPDVIVIGADVSNIQESKRYVDETVDHFEQLDHLVNNAGIAIPTLIEDCSDITKYTPVIDVNFWGAVHGTLHAIPHLKKSKGRIIVIASTCGWFPLPRSSFYNASKAALISFFETLRIELGWCIGITIVTPGFIKTELALKAYEERPSLKMIPMGSAFECAKDIVKSACRGDMYVTNPSWVKVLFPFKVFYPELVDWVQQHIFRLLPNPCKKGNRHMYKNNQRA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05776 319 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Vivi5g05776 319 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Vivi5g05776 319 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Vivi5g05776 319 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Vivi5g05776 319 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Vivi5g05776 319 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Vivi5g05776 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Vivi5g05776 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Vivi5g05776 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Vivi5g05776 319 PANTHER RETINOL DEHYDROGENASE-RELATED 45 304 - -
Vivi5g05776 319 Gene3D - 33 301 - -
Vivi5g05776 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 298 IPR036291 -
Vivi5g05776 319 Pfam short chain dehydrogenase 48 240 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05776 Vivi-Chr5 161532749 161534520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05776 49 250 Acyl Lipid Metabolism Gene Families AT1G24360 32.692 6.20e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05776 K22418 - gmx:100808990 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05776 5 161532749 161534520 Vivi5g05776 5 161532749 161534520 ECH