Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05737 ATGTCTAGGGTTTTGGCGCAGTCAATTTATGTCCCTGGCGTAGTTGCTGGGCAAAGGCATGGTGGCAATAACAACAACAACAAGGGTTTTGCGAAACCCAGAAGGTCTGTTAAAATGATGTATGGTACACGAACCGCTGCGCCGAGAGTGGCGAGTTTCTCGGGGTTAAGAACTTTGAATTCGTTGGATTCGATGTTGAGACCCGGTCAGGATTTTCATTCTAAGGTGTTTAGTCAGATGGCGATTAGTAGAGCGAAGAGCGGGAGAGGTAGTAGATGTGTGACGAAAGCTATGTTTGAGCGGTTTACTGAGAAGGCGATTAAAGTGATTATGTTGGCTCAGGAGGAAGCAAGGCGGTTGGGGCATAATTTCGTTGGGACGGAGCAAATTTTGTTGGGGCTTATTGGTGAGGGGACTGGTATTGCTGCTAAGGTTTTGAAGTCGATGGGGATTAACTTGAAGGATGCAAGGGTGGAAGTGGAGAAGATAATTGGGAGGGGGAGTGGGTTTGTTGCTGTTGAGATTCCGTTTACTCCTCGTGCTAAGAGAGTTTTGGAACTCTCCTTGGAGGAGGCTCGCCAACTTGGTCACAATTATATTGGAGCAGAGCACTTGCTTTTAGGTCTTCTTCGAGAGGGAGAGGGTGTGGCAGCACGTGTCCTTGAAAATCTGGGTGCTGATCCAAATAATATTCGAACCCAGGTTATTCGTATGGTTGGTGAGGGTGCTGACAATGTTGGAGCTACTGTTGGCTCTGGAAGTAGTAACAATAAGATGCCAACATTGGAGGAATATGGCACCAATTTGACCAAGCTAGCCGAGGAGGGAAAATTGGATCCTGTAGTGGGTAGGCAGGCACAAATTGAACGTGTCACTCAAATCTTAGGTCGTCGTACCAAAAATAATCCTTGTCTTATTGGGGAACCTGGTGTCGGGAAGACAGCTATTGCTGAAGGTCTTGCTCAACGGATTGCAAATGGCGATGTTCCCGAAACCATTGAGGGAAAGAAGGTTATTACCCTAGACATGGGTCTACTTGTTGCTGGAACTAAATACCGTGGAGAATTTGAAGAGAGATTGAAAAAACTGATGGAGGAAATCAAACAAAGTGATGAAATTATACTTTTCATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCTGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGTGTATAGGAGCCACCACATTAGATGAATATAGGAAGCACATTGAAAAAGATCCCGCTTTAGAGAGGCGATTTCAACCAGTTAAAGTGCCAGAACCAACTGTGAGTGAAACCATACAAATTCTGAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTTCGTTATACCGATGATGCTCTTGTGGCCGCTGCAGAGCTCTCACATCAATATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGACGAAGCTGGGTCCCGAGTCCGACTTCAACATGCACAGTTACCCGAAGAAGCAAGAGGTCTCGAAAAGGAGGTTAGACAGATAGTTAAGGAGAAAGATCAAGCTGTCCGTAACCAAGAATTTGAGAAGGCTGGAGAGCTGCGGGATAAAGAAATGGATCTTAAGACTCAGATATCAGCACTTATAGAAAAAAACAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGACGAAGGTGCACTTGTGACCGAAGTTGACATACAACATATTGTTGCCGCCTGGACTGGTATCCCTGTTGACAAAGTCTCTGTTGATGAATCTGACCGCCTTCTCAAAATGGAAGATACCCTACATAAACGCATTATTGGTCAGCATGAAGCGGTAGAGGCCATTAGCCGGGCTATCCGCCGAGCTCGTGTTGGACTTAAGAATCCTAATCGTCCAATCGCCAGCTTCATCTTTTCCGGCCCTACTGGTGTGGGGAAGTCTGAGTTAGCCAAAGCATTGGCCTCATACTACTTTGGATCTGAAGAAGCCATGATTCGGCTTGATATGAGTGAATTTATGGAAAGGCACACAGTTTCCAAGCTCATTGGTTCACCTCCTGGATATGTTGGTTACACCGAGGGTGGTCAACTGACAGAGGCAGTTCGGCGTCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCTCACCCTGATGTCTTCAACATGATGCTTCAAATCCTGGAAGATGGCAGGCTAACAGACAGTAAGGGAAGAACTGTTGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGTCGCATAGGATTTGACCTTGACTATGACGAGAAGGACAGCAGTTATAACCGAATCAAGAGCTTGGTGACCGAAGAGCTAAAACAATACTTTAGGCCAGAGTTCTTGAATAGGCTGGATGAAATGATTGTTTTCAGGCAACTCACAAAACTGGAGGTTAAGGAAATAGCTGATATAATGCTGAAGGAGGTATTTGAAAGACTGAAAACCAAAGAGATTGAACTCTCGGTGACAGAGAGATTTAGGGAGAGAGTGGTCGACGAAGGTTATAATCCTAGTTATGGTGCCAGGCCTCTTAGAAGAGCGATAATGCGACTTCTGGAAGACAGCATGGCTGAGAAGATGCTTGCTAGGGAGATTAAAGAGGGTGACTCTGTTATAGTGGATGCTGACTCTGATGGCAATGTGATTGTACTCAATGGTAGCACTGGTGCTCCAGATTCATTGTCGGACGTTCTTACTGTGTGA 2790 0.4538 MSRVLAQSIYVPGVVAGQRHGGNNNNNKGFAKPRRSVKMMYGTRTAAPRVASFSGLRTLNSLDSMLRPGQDFHSKVFSQMAISRAKSGRGSRCVTKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGAEHLLLGLLREGEGVAARVLENLGADPNNIRTQVIRMVGEGADNVGATVGSGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVSETIQILKGLRERYEIHHKLRYTDDALVAAAELSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARGLEKEVRQIVKEKDQAVRNQEFEKAGELRDKEMDLKTQISALIEKNKEMSKAESEAGDEGALVTEVDIQHIVAAWTGIPVDKVSVDESDRLLKMEDTLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIELSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSTGAPDSLSDVLTV 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05737 929 Gene3D - 822 919 - -
Vivi5g05737 929 SUPERFAMILY Double Clp-N motif 100 240 IPR036628 -
Vivi5g05737 929 CDD RecA-like_ClpB_Hsp104-like 603 819 - -
Vivi5g05737 929 FunFam Chaperone clpB 1, putative 250 442 - -
Vivi5g05737 929 FunFam ATP-dependent chaperone ClpB 822 914 - -
Vivi5g05737 929 Pfam C-terminal, D2-small domain, of ClpB protein 822 902 IPR019489 -
Vivi5g05737 929 Pfam Clp amino terminal domain, pathogenicity island component 189 240 IPR004176 -
Vivi5g05737 929 Pfam Clp amino terminal domain, pathogenicity island component 113 165 IPR004176 -
Vivi5g05737 929 ProSitePatterns Chaperonins clpA/B signature 2. 676 694 IPR028299 -
Vivi5g05737 929 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 98 246 - -
Vivi5g05737 929 SMART AAA_5 642 823 IPR003593 GO:0016887
Vivi5g05737 929 SMART AAA_5 299 439 IPR003593 GO:0016887
Vivi5g05737 929 FunFam ATP-dependent Clp protease subunit 595 820 - -
Vivi5g05737 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 539 IPR027417 -
Vivi5g05737 929 Coils Coil 512 532 - -
Vivi5g05737 929 Gene3D - 98 245 IPR036628 -
Vivi5g05737 929 ProSiteProfiles Clp repeat (R) domain profile. 99 241 IPR004176 -
Vivi5g05737 929 Gene3D - 445 588 - -
Vivi5g05737 929 ProSitePatterns Chaperonins clpA/B signature 1. 394 406 IPR018368 GO:0005524
Vivi5g05737 929 SMART ClpB_D2_small_2 822 912 IPR019489 -
Vivi5g05737 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 591 908 IPR027417 -
Vivi5g05737 929 CDD AAA 282 434 - -
Vivi5g05737 929 PANTHER ATP-DEPENDENT CLP PROTEASE 103 909 - -
Vivi5g05737 929 Gene3D - 595 820 IPR027417 -
Vivi5g05737 929 FunFam ATP-dependent Clp protease ATP-binding subunit 443 529 - -
Vivi5g05737 929 Gene3D UVR domain 508 572 - -
Vivi5g05737 929 Coils Coil 353 373 - -
Vivi5g05737 929 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 646 664 IPR001270 GO:0005524
Vivi5g05737 929 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 691 709 IPR001270 GO:0005524
Vivi5g05737 929 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 720 738 IPR001270 GO:0005524
Vivi5g05737 929 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 753 767 IPR001270 GO:0005524
Vivi5g05737 929 Pfam AAA domain (Cdc48 subfamily) 641 815 IPR003959 GO:0005524|GO:0016887
Vivi5g05737 929 Pfam ATPase family associated with various cellular activities (AAA) 304 420 IPR003959 GO:0005524|GO:0016887
Vivi5g05737 929 ProSiteProfiles UVR domain profile. 516 551 IPR001943 GO:0005515
Vivi5g05737 929 Gene3D - 249 442 IPR027417 -
Vivi5g05737 929 Pfam AAA lid domain 443 544 IPR041546 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05737 Vivi-Chr5 161035578 161040682 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05737 K03696 - gmx:100804035 1590.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05737 5 161035578 161040682 Vivi3g02244 3 36885173 36892136 PCT