Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05721 ATGAACAATGGTAATGTGACAATGACAAAGACTATTCTTCATGATCTTCATGAGAAACAAAGACAGAGTCCTTACTATGATAATCTCTGTCGACCCGTCTCAGATTTGGTTCCATTCATCGCCTCTGGAATCAGAGGTGTTACTACCAATCCTGCGATATTTGAAAAAGCTATATCATCATCCAATGCTTACAATCAACAGCTGAGGGGTTTGGTGGAGGCAGGAAAAGACATAGAAAGTGCTTATTGGGAGTTGGTTGTGAAAGACATACATGATACTTGTAAACTCTTGGAACCAATTTACATTGAATCAGAGGGTGTAGATGGTTATGTGTCTGTTGCAGTTTCTCCCAAGCTTGCAAATGATACCGGAGGGACAATTGAAGCAGCGAAATGGCTTCATAAAATGGTTGCGTGTCCAAATGTTTATATTAAAATTCCTGCAATTGATGAGTCCATTCCTTCAATAAAGGAAGTTATTTCTCTTGGGATAAGTGTAAATGTAACTCTCATATTCTCTCTCCCTCGATATGAAGAAGTTATTAATGCTTACTTGGATGGTCTTGAGGCTTCTGGTATGAATGATCTGTCTAAGGTTTCAAGTGCAGCAGCTTTCTACATCAGTAGAGTGGATGTTGCAATTGACAAGAAACTTGAGCAGATTGGTACTGCTGAGGCTCTCGACCTCACAGGAAAGGCCGCGGTTGCTCAAGCAGTGTTAGCTTATCAGCTTTACCAGAAAATGTTTTCGGGTCCAAGATGGGAGCTCTTGGAGAAGAGAGGTGCCAAGAAGCAAAGACTGATGTGGGCATCGACAAATGTGAAAAATCCATCTTACTCAGATACTTTTTATGTTAATTCCCTTATTGGACCAGATACGATTTCAACCATGCCACCAGACCCTGCTCTTAAAGCATTCATGGACCATGGTATTCTTTCAAGAACCATTGATGCAAAAGTATCAGAGGCTGAAAACATTTACAATGCAATCGAGGCGCAGGGGATTGATTGGAGTTGTGTTGGATCACAACTTGAAAACGACGTGCTGGATTCTTTCAAAAGAAGCTTTGAAAATGTGATTGAATGCTTGGGAAAGAAGGCTGGAATGCAAGTGGTAGATAGATAG 1125 0.408 MNNGNVTMTKTILHDLHEKQRQSPYYDNLCRPVSDLVPFIASGIRGVTTNPAIFEKAISSSNAYNQQLRGLVEAGKDIESAYWELVVKDIHDTCKLLEPIYIESEGVDGYVSVAVSPKLANDTGGTIEAAKWLHKMVACPNVYIKIPAIDESIPSIKEVISLGISVNVTLIFSLPRYEEVINAYLDGLEASGMNDLSKVSSAAAFYISRVDVAIDKKLEQIGTAEALDLTGKAAVAQAVLAYQLYQKMFSGPRWELLEKRGAKKQRLMWASTNVKNPSYSDTFYVNSLIGPDTISTMPPDPALKAFMDHGILSRTIDAKVSEAENIYNAIEAQGIDWSCVGSQLENDVLDSFKRSFENVIECLGKKAGMQVVDR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05721 374 CDD Transaldolase_like 23 357 IPR004732 GO:0004801|GO:0005737|GO:0006098
Vivi5g05721 374 Pfam Transaldolase/Fructose-6-phosphate aldolase 40 360 IPR001585 GO:0005975
Vivi5g05721 374 SUPERFAMILY Aldolase 20 366 - -
Vivi5g05721 374 PIRSF Trnald_Bac_Plnt 2 373 IPR004732 GO:0004801|GO:0005737|GO:0006098
Vivi5g05721 374 NCBIfam transaldolase 42 360 IPR004732 GO:0004801|GO:0005737|GO:0006098
Vivi5g05721 374 ProSitePatterns Transaldolase signature 1. 46 54 IPR018225 GO:0005975
Vivi5g05721 374 Hamap Transaldolase [tal]. 1 373 IPR004732 GO:0004801|GO:0005737|GO:0006098
Vivi5g05721 374 Gene3D Aldolase class I 11 367 IPR013785 -
Vivi5g05721 374 PANTHER TRANSALDOLASE 21 366 IPR001585 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05721 Vivi-Chr5 160682854 160684983 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05721 K00616 - gmx:100811673 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05721 5 160682854 160684983 Vivi5g05721 5 160682854 160684983 ECH