Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05567 ATGGCCACCACCACCATTACCAACAAGACAGAGATAGAGAAAAAGATAGATGATAATGATAATCATCAAGAACAAGAACTAAAGCATCTTGGGTTTGTGAGAATTGTTGTTATTCATGCTTTTGTTTGCATGTCCAGTCTTTATGATTATGCGAAACAGAATTCGGGATCTTTGAGATCTGCTGTTGGAACCGTTGAAGGTACTGTTACTACAGTTCTTGGTCCTGTTTATCACAAATTCAAGCCTCTCCCTCAAGATCTTCTCCTTTTTCTCGACAATAAGGTGGATGAAGCGACCAACAAATTCGATGAGCGTGCTCCGCCTTTTGCGAAGCAAGTAGCGAACCAAGCAAAGGATTTGATTCAAGAAGTAACACACAAAGCTGAGAAAGTAGTGAATGAAGCACAATCTGGTGGGGCAAAAGCCGCCGCAAATTATGTGGTTACAGAATCAAAGCAAGTAGTGCTAACAAGTTCAGTAAAATTATGGTCAGGTCTCAACCATTATGCACTGTTTCATGCAGTAGCAGAGTTGGCAATTCCAACAGCTGCACATTGGTCAGAAAAGTACAACCATGTTGTTAAGAACATTAGTGGAAAGGGCTATGCTGTGTCTGGATATTTGCCTTTGATCCCTGTTGATGAAATAGCTAAGGCATTTAAACAAGGAGAAGGTAATGTGAGTGTTGATCAAAAAAAAACTTTGGTGGAAGATGTTTCTGATTGA 726 0.4008 MATTTITNKTEIEKKIDDNDNHQEQELKHLGFVRIVVIHAFVCMSSLYDYAKQNSGSLRSAVGTVEGTVTTVLGPVYHKFKPLPQDLLLFLDNKVDEATNKFDERAPPFAKQVANQAKDLIQEVTHKAEKVVNEAQSGGAKAAANYVVTESKQVVLTSSVKLWSGLNHYALFHAVAELAIPTAAHWSEKYNHVVKNISGKGYAVSGYLPLIPVDEIAKAFKQGEGNVSVDQKKTLVEDVSD 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05567 241 Coils Coil 114 134 - -
Vivi5g05567 241 Pfam Rubber elongation factor protein (REF) 22 222 IPR008802 -
Vivi5g05567 241 PANTHER REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940 19 227 IPR008802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05567 Vivi-Chr5 158808329 158809914 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05567 - - tpra:123914274 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05567 5 158808329 158809914 Vivi5g05567 5 158808329 158809914 ECH
Vivi3g03375 3 56755861 56757385 Vivi5g05567 5 158808329 158809914 PCT