Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05558 ATGGATCCAGACGCGTTGGCAAAGGCATTTGTGGAGCACTACTACACCACCTTCGACAACAACCGTGCCGGACTTGCCACTCTTTACCAAGAAGGATCCATGCTCACCTTCGAAGGTCAGAAGATTCAAGGTTCCCCCAACATCGTCGCCAAGCTCACTTCTCTCCCTTTCCAGCAGTGCCATCACTCCATCACCACCGTCGATTGCCAACCTTCCACCGTCAACGCTGGCATGCTTGTCTTCGTCAGCGGTAACCTTCAACTCGGCGGTGAACAACACGCCCTCAAATTCAGTCAGATGTTCCATTTGATACCAACACAGCAAGGAAGCTATTATGTGCAGAATGACATATTCCGTTTGAACTATGCCTGA 372 0.5054 MDPDALAKAFVEHYYTTFDNNRAGLATLYQEGSMLTFEGQKIQGSPNIVAKLTSLPFQQCHHSITTVDCQPSTVNAGMLVFVSGNLQLGGEQHALKFSQMFHLIPTQQGSYYVQNDIFRLNYA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05558 123 SUPERFAMILY NTF2-like 3 121 IPR032710 -
Vivi5g05558 123 CDD NTF2 2 122 IPR018222 -
Vivi5g05558 123 FunFam Nuclear transport factor 2 1 123 - -
Vivi5g05558 123 ProSiteProfiles Nuclear transport factor 2 domain profile. 6 120 IPR018222 -
Vivi5g05558 123 Pfam Nuclear transport factor 2 (NTF2) domain 7 120 IPR002075 -
Vivi5g05558 123 PANTHER NUCLEAR TRANSPORT FACTOR 2 2 122 IPR045875 GO:0006913
Vivi5g05558 123 Gene3D - 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05558 Vivi-Chr5 158664758 158666324 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05558 - - gmx:100777334 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05558 5 158664758 158666324 Vivi5g05558 5 158664758 158666324 ECH
Vivi3g03401 3 57198049 57201107 Vivi5g05558 5 158664758 158666324 PCT