Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05193 ATGTTAGCTTATTCGAAAGTGTGTCACAAAAACCCTAACCTTTTATTGAAAGATCCTACAAAAAGAAACCTTGTAAGTGGCGAGGATGGTTTTATATGTTCTACAAGCCAAAGATTCAATGCTGCAGCATGTAGGAAGGCCGTTAACACCTTTTCCATCCTTAATGAGCATCTCTTTAGAGTGGTTGAGGGTGTGGCTTTTAAGAAACTATGTAAAAAATTACAACCACAAATGGCTATCCCTTCAAGGAGGACTATTGCTAGGGATTGTTTCCTGCTTTACTTAGATGAAAAACAACAACGACAAATTCATCATGTCATAGCAACAATAACAATTCAACATATTGCACAACAACAACAAACATCAACATGTTACAACAACAACAACAACAATTCATCATGTTACAACAACAACAACAACAATTCATCATGTTACAACAACAACAATTCATTCTATTGCACAACAACAACAACAAACATCAAACTCACCTCATGGATCTTCAACACCTGTTTCCGATCCGAGAAAAACCTCACCAAAACCTACGGTTCATGGGCTCTAATCACAGGAGCAACCGACGGAATCGGAAAAGCCTTATCCTACCAACTAGCCTACTCTGGTCTCAACCTCATCCTCGTAAGCAGAAACTCAAAGAAGCTTGAAACAGTTAGAACCGAAATCAAAGCAAAACACTCTCACGTCCAGATCAAAACCGTTACAATCGACTTTTCCGGCGAGGTTTCTGAAGGTCTTAAGGAAATAGAAGCTTTGGCTAGGGTTTTGGATCTTGGAGTTGTGATCAACAATGTTGGAATCACTTACCCTAAGGCTATGTTCTTTCATGAAGTGGATGAGGAAATTTGGATGAAGATTGTTAGGGTTAACATTGAAAGTACAACGAGAATAACGAGAGCGGTTCTGGGTGGAATGATGGAGAGGAAGAAGGGTACAATCGTAAATATTGGATCCGGTGCTGCGGTGGTTGTGCCTTCGCATCCTCTCTTTACAATCTATGCTGCAACTAAAGCTTATGTAGATCAATTTTCAAGATGTTTACACATGGAGTACAAACAATATGGAATTCACGTGCAATGTCAGGTACCGCTGTATGTTGCGACGAACATGGTATCAAAGGTAGCATCTATTGGAAGAGATTCTTTATTCATACCAACACCTGAAGGTTATGCAAGAGCTGCTATTCGTAAAATAGGGTATGAACCAAGATGCACACCTTATTGGGCTCACTCAATTCAATGGGCCTTTGCTCGTTTAATTCCGGACCAACTTCTCGACTATTGGCGCATGTCCATTGGTTTACGACGTAGGAATCGCAAGGACTAG 1338 0.4028 MLAYSKVCHKNPNLLLKDPTKRNLVSGEDGFICSTSQRFNAAACRKAVNTFSILNEHLFRVVEGVAFKKLCKKLQPQMAIPSRRTIARDCFLLYLDEKQQRQIHHVIATITIQHIAQQQQTSTCYNNNNNNSSCYNNNNNNSSCYNNNNSFYCTTTTTNIKLTSWIFNTCFRSEKNLTKTYGSWALITGATDGIGKALSYQLAYSGLNLILVSRNSKKLETVRTEIKAKHSHVQIKTVTIDFSGEVSEGLKEIEALARVLDLGVVINNVGITYPKAMFFHEVDEEIWMKIVRVNIESTTRITRAVLGGMMERKKGTIVNIGSGAAVVVPSHPLFTIYAATKAYVDQFSRCLHMEYKQYGIHVQCQVPLYVATNMVSKVASIGRDSLFIPTPEGYARAAIRKIGYEPRCTPYWAHSIQWAFARLIPDQLLDYWRMSIGLRRRNRKD 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05193 445 PRINTS Glucose/ribitol dehydrogenase family signature 337 356 IPR002347 -
Vivi5g05193 445 PRINTS Glucose/ribitol dehydrogenase family signature 358 375 IPR002347 -
Vivi5g05193 445 PRINTS Glucose/ribitol dehydrogenase family signature 260 271 IPR002347 -
Vivi5g05193 445 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Vivi5g05193 445 PRINTS Glucose/ribitol dehydrogenase family signature 309 325 IPR002347 -
Vivi5g05193 445 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 178 409 - -
Vivi5g05193 445 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 260 271 IPR002347 -
Vivi5g05193 445 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 337 356 IPR002347 -
Vivi5g05193 445 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 315 323 IPR002347 -
Vivi5g05193 445 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 324 352 IPR020904 GO:0016491
Vivi5g05193 445 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 179 435 IPR036291 -
Vivi5g05193 445 Gene3D - 176 411 - -
Vivi5g05193 445 CDD 17beta-HSD1_like_SDR_c 182 425 - -
Vivi5g05193 445 Pfam short chain dehydrogenase 184 378 IPR002347 -
Vivi5g05193 445 PANTHER RH59310P 157 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05193 Vivi-Chr5 153114755 153130535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05193 160 442 Lipid Metabolism Gene Families AT1G24470 59.011 1.37e-122 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05193 K10251 - jre:108985101 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05193 5 153114755 153130535 Vivi5g05193 5 153114755 153130535 ECH
Vivi5g05193 5 153114755 153130535 Vivi3g03288 3 55601727 55638565 PCT