Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05188 ATGGACCCAGCTGCTTCTCGTCCTGCTGTAGTCATCGACAATGGCTCCGGGTATACCAAGATGGGGTTTGCTGGTAATGTTGAACCTTGTTTTATTGTTCCAACAGTAGTTGCAATTAATGAGTCGTTTCTGAATCAATCGAGGAGTTCTTCTAAGGGAAATTGGATTGCGCAGCATAATGCTGGTGTTATGGCTGATCTTGATTTCTTTATTGGAGATGATGCACTTTCTAAGGCTCGGTCTAGCAGTACTTATAATCTCAGCTACCCAATTAAACATGGTCAGGTTGAGAATTGGGATGCCATGGAACGATACTGGCAGCAGTGTATATTCAATTATTTGAGGTGTGATCCTGAGGATCATTATTTTCTCTTGACAGAGAGTCCATTGACAGCGCCAGAGAGTCGCGAGTATACTGGAGAAATTATGTTTGAGACTTTTAATGTGCCTGGACTTTACATTGCTGTGAACTCCGTGCTTGCTCTGGCTGCTGGCTATACAACGTCTAAGTGTGAGATGACAGGAGTTGTAGTTGATATCGGAGATGGGGCTACACATGTTGTACCAGTTGCGGATGGTTATGTTATTGGAAGTAGCATCAAGTCAGTTCCTATTGCTGGAAAGGATGTTACTCTTTTTGTCCAGCAGCTAATGCGGGAAAGAGGAGAGAATATACCTCCAGAAGACTCTTTTGAAGTGGCTCGGAAAGTGAAAGAAATGCATTGCTACACCTGCTCTGACATAGTGAAGGAATTTAATAAGCATGACAAAGAACCAGCCAAGTATATCAAGCAATGGAGAGGCGTAAAACCAAAGACTGGGGCTCCGTATTCCTGTGATATTGGCTATGAACGCTTTCTTGGACCTGAGGTTTTCTTTAATCCTGAGATGTATAGCAGCGACTTTACCACTCCTTTGCCAGTCGTAATAGACAAGTGCATTCAGTCTGCACCAATTGACACAAGGAGATCACTGTATAAGAATATAGTGTTATCAGGGGGATCAACGATGTTCAAGGATTTTCATAGGAGATTACAACGTGATATAAAGAAAATTGTGGATGCTCGTGTCCTTGCAGCTGAAGCACGCCTAAATGGGGAGATAAAATCACATCCCGTGGAGGTCAATGTACTCAGCCATCCTATCCAAAGGTTTGCAGTTTGGTTTGGAGGATCTGTGCTAGCATCAACGCCAGAATTTTTTACGGCTTGTCATACAAAGGCAGAATATGAAGAATATGGAGCAAGCATTTGCCGCACAAATCCTGTTTTCAAGGGGATGTATTAG 1287 0.4297 MDPAASRPAVVIDNGSGYTKMGFAGNVEPCFIVPTVVAINESFLNQSRSSSKGNWIAQHNAGVMADLDFFIGDDALSKARSSSTYNLSYPIKHGQVENWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDIGDGATHVVPVADGYVIGSSIKSVPIAGKDVTLFVQQLMRERGENIPPEDSFEVARKVKEMHCYTCSDIVKEFNKHDKEPAKYIKQWRGVKPKTGAPYSCDIGYERFLGPEVFFNPEMYSSDFTTPLPVVIDKCIQSAPIDTRRSLYKNIVLSGGSTMFKDFHRRLQRDIKKIVDARVLAAEARLNGEIKSHPVEVNVLSHPIQRFAVWFGGSVLASTPEFFTACHTKAEYEEYGASICRTNPVFKGMY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05188 428 PANTHER ACTIN 9 415 IPR004000 -
Vivi5g05188 428 Gene3D - 158 386 - -
Vivi5g05188 428 FunFam Actin-related protein 3 (ARP3) 205 303 - -
Vivi5g05188 428 Gene3D - 10 414 - -
Vivi5g05188 428 SMART actin_3 7 423 IPR004000 -
Vivi5g05188 428 FunFam Putative actin-related protein 5 387 415 - -
Vivi5g05188 428 SUPERFAMILY Actin-like ATPase domain 7 177 IPR043129 -
Vivi5g05188 428 Gene3D Actin; Chain A, domain 4 205 303 - -
Vivi5g05188 428 CDD NBD_sugar-kinase_HSP70_actin 10 206 - -
Vivi5g05188 428 FunFam Actin-related protein 3 10 174 - -
Vivi5g05188 428 Pfam Actin 7 419 IPR004000 -
Vivi5g05188 428 SUPERFAMILY Actin-like ATPase domain 173 423 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05188 Vivi-Chr5 153070736 153076331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05188 9 418 Miscellaneous Gene Families AT2G42100 34.390 4.83e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05188 K18584 - gmx:100780462 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05188 5 153070736 153076331 Vivi5g05188 5 153070736 153076331 ECH