Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05148 ATGATTTGCCAAACCAAAACCCTATCAAAAAACCAAAACCAAAACCGAAACTGGGCGCCACACCTCTTCCACAGCACAGAAACCATGGGAGGTCGCGGGAGGTCACGAACTCAACGAAAGCACTTTCGCGACAACAGAGAAAACGTTTGGAAGCGTTCCAAATCCGATCCAGATGCTTCCTTATCCTCAGACAAAACTCAAAATACTCATTGGGCTCCTTTCGCTACTCAGAACCCTTCCTTCGATTCATATTACAAGGAACAGTTAATCGTCGATCCACAAGAATGGGACAAATTCATCACAGTTCTCAGAACACCCTTGCCTGCATCCTTTAGAATCAATGCTAGTAGTCAATTTGCTGACGATATTCGTTCGCAATTGGAAAATGATTTTGTGCATTCTCTGCGTGCCGAGGTTGCTGAAGGGGGTGAGACGGAGGCTATTCGGCCATTGCTTTGGTATCCAGGGAACTTTGCTTGGCATTCCAATTTTTCAAGGATGCAGCTTAGGAAGAATCAAACACTAGAGAGGTTCCACGAATTCTTAAAGCTAGAGAACGAAATTGGAAATATGACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTATTCTTGGATGTGCATTCAGACCATTTTGTACTTGATATGTGTGCTGCACCAGGTTCCAAAACATTCCAATTGCTCGAGATTATACACCAATCAACAAAAGCCGGATCACTACCTGCCGGAATGGTTATAGCAAATGATCTTGATGTCAAAAGATGTAATCTTCTCATCCACCAAACCAAAAGAATGTGCACGGCCAACCTAATTGTTACTAATCACGAAGCACAACATTTCCCAGGATGCCGTTTAAAAGGGAATCATAAAAGAGAGGAGTTAGATCACAATATTCACCAACTGTTATTTGATCGTGTTTTGTGTGATGTCCCGTGTAGTGGAGATGGTACGCTTCGTAAGGCACCTGATATGTGGAGAAAATGGAATTCAGGGATGGGACAAGCGCTTCATAGCCTACAAATTTTAATTGCTATGCGAGGTTTATCTTTACTCAAAATTGGTGGGAAAATGGTTTACTCTACGTGCTCAATGAATCCTATTGAAAATGAAGCTGTGGTTGCAGAGGTTTTGCGGAGGTGTGGCGAGTCCGTCAAACTTGTTGATGTGTCTAGTGAGCTTCCACAACTAATTCGTCGGCCAGGTCTCAAGAGATGGAAGGTATATGACAAGAGCAGTTGGTTGGCCTCTTACAGTGATGTTCCTAAGTTTCGTAGAAGTGTAATTTTTCCCAGTATGTTTCCTTCTGGCAAAGGAAACCAGGATCTTGATAGTGGTAATGGTAATAATGATATGGAAGATAACATTACTAGTGTAGAAAATGGAAAAGCTGAAGATGGTGTTGAAGCACTAGAGAATCCTGTTACGTCCGAGTCTGCTGATGAAGTTTCAGCTTTTCCTCTAGAGCATTGCATGAGGATATTGCCTCATGATCAGAACACTGGGGCCTTCTTCATTGCTGTCCTGCAAAAAGTTTCTCCTCTGCCAGTTGTTCCGGAAAAACCTAGCAAACAAATTGTTGAACAAAATGTAGAACCACCAAACCAGAGTCTTGAGAACGCACAAACAACACAGATCAATTCATCTGACGGTACAATTGAAGAAGTCGTCAAAGCAGTTCCAGAGGAAAATATGATTGACAGTCTATCCAATACAGAAGATTTGGAAGCTACTCCTCTTACACGTGAAGAACAGAATTCTGAGGAAACTGAAGTGCCACATAATGCACAGGACACAGCAAAGAAGGTTTCAGGCAAAAGAAAGCTACAAATTCAAGGCCAATGGAGAGGTGTTGACCCTGTTGTCTTTTTTAAAGATGATACAATTATTAATAGTATAAGGGACTTCTATGGGATTGATGAGCGTTTTCCATTCAATGGCCACCTTATCACACGAAACAGTGATACAAGTCACGTGAAAAGAATTTACTATGTCTCCAAGTTTGTCAAGGATATTCTTGAGTTGAACTTCTCAGCTGGACAGCAACTGAAAATAACCTCAGTTGGCATGAAGATGTTTGAAAGACAAACAGCACGAGAAGGTAGCGATGCACCATGTGCTTTCCGGATATCATCTGAAGGATTGCCCCTTATTCTCCCATACATAACAAAGCAAATTATACAGGCATCTCCTGTGGACTTCAAGCATCTTCTGCAGGACAAAGATGTAAAATTTACAGATTTTGCTGATGCCGAGTTTGGTAAAAAGGCAGAAAATCTATTGCCAGGCTGTTGCGTGATAGTTCTGGGTAAAGAGAACACAGTTGCTACAGAGCCCCTCAAAGTTGATGAGTCAACAATAGCCATCGGATGCTGGAGGGGTAGGGCAAGGTTGTCAGTGATGGTTACTGCAATGGACTGCCAAGAATTGCTTGGAAGGCTTTTAATACGTCTAGACACAGAAAAGGGCTCTTCTGGGCTTGCAGACAAATCCTCTAATGATGTGGGAGGTGAAGCCTGTACAGAAGTTGAAGGATAA 2535 0.4245 MICQTKTLSKNQNQNRNWAPHLFHSTETMGGRGRSRTQRKHFRDNRENVWKRSKSDPDASLSSDKTQNTHWAPFATQNPSFDSYYKEQLIVDPQEWDKFITVLRTPLPASFRINASSQFADDIRSQLENDFVHSLRAEVAEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNMTRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPAGMVIANDLDVKRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLKGNHKREELDHNIHQLLFDRVLCDVPCSGDGTLRKAPDMWRKWNSGMGQALHSLQILIAMRGLSLLKIGGKMVYSTCSMNPIENEAVVAEVLRRCGESVKLVDVSSELPQLIRRPGLKRWKVYDKSSWLASYSDVPKFRRSVIFPSMFPSGKGNQDLDSGNGNNDMEDNITSVENGKAEDGVEALENPVTSESADEVSAFPLEHCMRILPHDQNTGAFFIAVLQKVSPLPVVPEKPSKQIVEQNVEPPNQSLENAQTTQINSSDGTIEEVVKAVPEENMIDSLSNTEDLEATPLTREEQNSEETEVPHNAQDTAKKVSGKRKLQIQGQWRGVDPVVFFKDDTIINSIRDFYGIDERFPFNGHLITRNSDTSHVKRIYYVSKFVKDILELNFSAGQQLKITSVGMKMFERQTAREGSDAPCAFRISSEGLPLILPYITKQIIQASPVDFKHLLQDKDVKFTDFADAEFGKKAENLLPGCCVIVLGKENTVATEPLKVDESTIAIGCWRGRARLSVMVTAMDCQELLGRLLIRLDTEKGSSGLADKSSNDVGGEACTEVEG 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05148 844 PRINTS RNA (C5-cytosine) methyltransferase signature 354 370 IPR023267 GO:0001510
Vivi5g05148 844 PRINTS RNA (C5-cytosine) methyltransferase signature 493 510 IPR023267 GO:0001510
Vivi5g05148 844 PRINTS RNA (C5-cytosine) methyltransferase signature 214 224 IPR023267 GO:0001510
Vivi5g05148 844 PRINTS RNA (C5-cytosine) methyltransferase signature 304 316 IPR023267 GO:0001510
Vivi5g05148 844 MobiDBLite consensus disorder prediction 1 74 - -
Vivi5g05148 844 MobiDBLite consensus disorder prediction 570 605 - -
Vivi5g05148 844 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g05148 844 MobiDBLite consensus disorder prediction 822 844 - -
Vivi5g05148 844 ProSitePatterns NOL1/NOP2/sun family signature. 303 314 IPR018314 GO:0003723|GO:0008168
Vivi5g05148 844 Pfam 16S rRNA methyltransferase RsmB/F 204 389 IPR001678 GO:0008168
Vivi5g05148 844 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 81 511 IPR029063 -
Vivi5g05148 844 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 160 181 IPR023270 GO:0016428
Vivi5g05148 844 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 682 694 IPR023270 GO:0016428
Vivi5g05148 844 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 388 407 IPR023270 GO:0016428
Vivi5g05148 844 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 99 511 IPR001678 GO:0008168
Vivi5g05148 844 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 76 418 - -
Vivi5g05148 844 MobiDBLite consensus disorder prediction 60 74 - -
Vivi5g05148 844 MobiDBLite consensus disorder prediction 40 59 - -
Vivi5g05148 844 Gene3D Vaccinia Virus protein VP39 75 423 IPR029063 -
Vivi5g05148 844 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 38 823 IPR023267 GO:0001510
Vivi5g05148 844 MobiDBLite consensus disorder prediction 576 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05148 Vivi-Chr5 152392732 152401383 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05148 K15334 - gmx:100808859 1292.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05148 5 152392732 152401383 Vivi5g05148 5 152392732 152401383 ECH
Vivi5g05148 5 152392732 152401383 Vivi3g03201 3 54354943 54362371 PCT