Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04872 ATGGTACACCAACTTTTGGATCTTAATATGCCTCTAAAGTTACATTTTACTGCTGTTGCAATTGCTTTGTTATATTCTTTTACATCTTATGCAGCTGATTATCATGAAACCTTTATTCAATGCTTTAAAAGTTATTCTAATTATAACTCCACTTCAATCTCTAAGGTTGTGTTCACCCAAACACACTCCTCACACTCATCTATACTCCGGTTTTCGGTTCAAAACCTTAGATTTGCATCCAACACAACTACAAAACCTCTTGTCATTGTAACACCTCGTGAAGTTCTAGAAATTCAAGCTACTGTAATCTGTTCCCAACGCCATGACATGGAGATTCGAATCCGAAGGGGCGGCCATGACTATGAAGGTCTGTCCTATGTTTCTAAATTTCCGTTCGTTGTTATTGATCTAATAAACCTTCGAGAAATCCAAATCGACTTAGAAAATAGCAATGCGTGGGTTCAAGGAGGGGCAACGGTCGGCGAACTTTTGTACAAAATAAGCCAAGAGAGCAAAACTCTCGGCTTCCCTGCAGGTGTTTGTCCTACTGTTGGAGTTAGCGGACTCATCAGCGGCGGTGGCTATGGTTTCCTGATGCGTAAACATGGTCTTTCCGCCGATAATATACTTGACGCTCACATAATTGATGTGAATGGTAGAGTTCTTGACAGAGAATCAATGGGTGAGGATCTGTTTTGGGCTATTAGAGGCGGTGGAGGAGCAAGCTTCGGAGTTATCGTAGCATGGAAGATAAAACTTGTTCATGTTCCATCCACTGTGACATTGTTCAATGTTCCAAGGACACTGGAACAAAATGGAACCATACTTATTCGTAAGTGGCAGTTAGTGGCAAATAAGCTTGATAAAGACCTAAACATTAGGATCATTTTGGAAAGGGCAAATTCAAGAACTCAAACAATAAAAGTCACATTTGAATCCTTGTTTCTTGGAGGTGTAGATAGACTCATTCTTCTGATGGAAGAGAATTTTCCGGAGCTTGGTTTGGTTAGAGAAGATTGTACTGAGATGAGTTGGATTGAATCAGTTCACTACCTTGCTGGTTTTACAAAGAATCAACCTCTTGAAGTTTTGTTGAATAGAACTCATGATGGTGTGTTGTTTTTCAAGGCAAAATCTGATTATGTTAGAGATCCAATTCCTGATATTGGATTTGAGGGGTTATGGCCAATGTTTTATGAAGACGAGGCGAAAAAGGCGGTGTTAATATTCACTCCTTATGGTGGCAGAATGGACGAGATATCGGATTCGGAAATTCCATTTCCACATAGAGCTGGAAACATTTACAAAATTCAGCACTTGGTTTTTTGGCAAGAGGAAGGTGATGAAGTAGAAAAAAGGCACATAAATTGGATGAGAAAACTTTATAGTTATATGGAACCTTTTGTTTCAAAGTCTCCAAGAGTTGCATATGTGAATTATAGAGACCTTGACATTGGAGTGAATAGCATTAATGGATACACAAGTTATAAGAAAGCTAGTATTTGGGGTTTAAAGTATTTCAAGAACAACTTCAAAAGATTGGCAATGGTTAAGACCAAAGTTGATCCTCTAAATTTCTTTAGAAATGAACAAAGCATACCTTCTATGCCTAGTTTTGATAACATAACAATGGATAGTAGTATATTGCCTTGTGTGGAAGGGGTGCAATTAGAATTTCCTAGAGCCGTACATGCCATAATGTAA 1704 0.385 MVHQLLDLNMPLKLHFTAVAIALLYSFTSYAADYHETFIQCFKSYSNYNSTSISKVVFTQTHSSHSSILRFSVQNLRFASNTTTKPLVIVTPREVLEIQATVICSQRHDMEIRIRRGGHDYEGLSYVSKFPFVVIDLINLREIQIDLENSNAWVQGGATVGELLYKISQESKTLGFPAGVCPTVGVSGLISGGGYGFLMRKHGLSADNILDAHIIDVNGRVLDRESMGEDLFWAIRGGGGASFGVIVAWKIKLVHVPSTVTLFNVPRTLEQNGTILIRKWQLVANKLDKDLNIRIILERANSRTQTIKVTFESLFLGGVDRLILLMEENFPELGLVREDCTEMSWIESVHYLAGFTKNQPLEVLLNRTHDGVLFFKAKSDYVRDPIPDIGFEGLWPMFYEDEAKKAVLIFTPYGGRMDEISDSEIPFPHRAGNIYKIQHLVFWQEEGDEVEKRHINWMRKLYSYMEPFVSKSPRVAYVNYRDLDIGVNSINGYTSYKKASIWGLKYFKNNFKRLAMVKTKVDPLNFFRNEQSIPSMPSFDNITMDSSILPCVEGVQLEFPRAVHAIM 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04872 567 Pfam Berberine and berberine like 476 534 IPR012951 GO:0016491|GO:0050660
Vivi5g04872 567 Gene3D - 144 534 IPR016169 -
Vivi5g04872 567 Gene3D - 259 472 - -
Vivi5g04872 567 PANTHER OS08G0158400 PROTEIN 33 536 - -
Vivi5g04872 567 SUPERFAMILY FAD-binding/transporter-associated domain-like 31 257 IPR036318 GO:0050660
Vivi5g04872 567 FunFam Berberine bridge enzyme-like 15 33 140 - -
Vivi5g04872 567 Gene3D - 32 140 IPR016167 -
Vivi5g04872 567 ProSiteProfiles PCMH-type FAD-binding domain profile. 82 256 IPR016166 GO:0071949
Vivi5g04872 567 Pfam FAD binding domain 86 222 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04872 Vivi-Chr5 148213095 148215465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04872 35 534 Miscellaneous Gene Families AT4G20820 51.200 2.18e-178 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04872 - - vvo:131603093 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04872 5 148213095 148215465 Vivi5g04872 5 148213095 148215465 ECH