Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04608 ATGGATCTTCATGCCGACGCTCCCAATTCCGGGGTGAAGAAACGAAAACAAGAGGAACAGGATGCTTTGGTCAGTGATCATGGAAATTCCATGAGTGTAGGGGAATCATCTGGTAGTGGTGACCCCTTCAAGAGTTTGACCTCGATATCACTGAATAAGAATTCAAATGGTTCCGGTTCTGATATTTCATGTCATGACGATGATGAGGATATGATTGATGATGATGATGCACTTGAAGATCCTGATTATGGATCTGATTTTTATGATGATGATGACATCTATGAAGATGACTATTCACTCATGCAGGATCAATTCGACAATGTGGATTTGCCTCCTGGGGTAGAAGCTTCACTACCTTGGTTGAAGGATATTTCTTCTAGCGAATGCAAGCCGGCTGTTGCTCATGTCCATTCAGAGTCCAGTTCGAAAGAAAAAGTAGATGAATCCACGGATACTGTCATGCAAAAATTTCGTCAATTTAAGTCATTTGATACTGTTGATTCTTTTCCAGATCATCACTATGATAAGGATGGTGCTTCAGTCTCAGATGCGCAGCGACCAAAGAATTGGGCAAAAAAAATCCAGGAAGAATGGAAAATTTTAGAGGAAAATTTGCCAGAAACAATCTTTGTGAGAGTTTGTGAATCTAAAATGGAGCTTCTTAGGGCTGTCATCGTTGGACCTCAAGGCACTCCATACCATGACGGTCTTTTCTTTTTCGACTGCTTCTTTCCTTCTGGCTACCCTGCAGGTCCACCGAAAGTTTACTATCACTCAGGTGGCCTAAGGCTAAATCCAAATTTGTATCAATGTGGAAAAGTGTGTCTTAGTCTCTTGGGAACTTGGCACGGTAAGAATAGCGAAAACTGGATTCCGGATAAATCAACCATGCTACAAGTCTTGGTTTCGATACAAGCTCTTATTCTGAATGAGAAACCTTTTTTTAATGAGCCTGGATATGCTAATTCCTTTCAAAGTGAGGAGGGGCAAAGGAGATCTAAGGATTACAATGATAATACATTTATTTTATCCTTGAAGACAATGATGTATACCCTGCGCAAACCGCCAAAGCACTTTGAGGACTTTGTTGCGGGGCATTTCCGTCAAAGGGGCGTGGACATACTGAAAGCATGTAAGTCATATGCTGAGGGAGGACCAGTTGGATCAGTTTTACATAATGCTGCAGCATCAAATATTCGTGTTAGTGCTTCTGGCAAGACCCAAAAAGAATTTCAGTTAACTGTGAGTAGGATGATGAATACCCTTGTTGCATTTTTCAGCAAAAATGGCTCCACGAACTGCGAAGAGTATCGATCTCTAGAGATTTATAACTTATCTGCTGCTGCTACTGCTAACTTGGAAGTTTTCAAGATAGAATCTTCTGGCTCAACAACATTAACCCAGGTCTGA 1410 0.4121 MDLHADAPNSGVKKRKQEEQDALVSDHGNSMSVGESSGSGDPFKSLTSISLNKNSNGSGSDISCHDDDEDMIDDDDALEDPDYGSDFYDDDDIYEDDYSLMQDQFDNVDLPPGVEASLPWLKDISSSECKPAVAHVHSESSSKEKVDESTDTVMQKFRQFKSFDTVDSFPDHHYDKDGASVSDAQRPKNWAKKIQEEWKILEENLPETIFVRVCESKMELLRAVIVGPQGTPYHDGLFFFDCFFPSGYPAGPPKVYYHSGGLRLNPNLYQCGKVCLSLLGTWHGKNSENWIPDKSTMLQVLVSIQALILNEKPFFNEPGYANSFQSEEGQRRSKDYNDNTFILSLKTMMYTLRKPPKHFEDFVAGHFRQRGVDILKACKSYAEGGPVGSVLHNAAASNIRVSASGKTQKEFQLTVSRMMNTLVAFFSKNGSTNCEEYRSLEIYNLSAAATANLEVFKIESSGSTTLTQV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04608 469 Gene3D Ubiquitin Conjugating Enzyme 144 429 IPR016135 -
Vivi5g04608 469 Pfam Ubiquitin-conjugating enzyme 194 337 IPR000608 -
Vivi5g04608 469 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 126 432 - -
Vivi5g04608 469 SUPERFAMILY UBC-like 181 358 IPR016135 -
Vivi5g04608 469 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 189 349 IPR000608 -
Vivi5g04608 469 MobiDBLite consensus disorder prediction 1 91 - -
Vivi5g04608 469 FunFam Putative ubiquitin-conjugating enzyme E2 38 150 429 - -
Vivi5g04608 469 MobiDBLite consensus disorder prediction 1 23 - -
Vivi5g04608 469 MobiDBLite consensus disorder prediction 24 61 - -
Vivi5g04608 469 CDD UBCc 192 337 IPR000608 -
Vivi5g04608 469 SMART ubc_7 192 349 - -
Vivi5g04608 469 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04608 Vivi-Chr5 144611751 144615711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04608 159 430 Miscellaneous Gene Families AT2G33770 49.265 3.76e-86 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04608 K10581 - gmx:100812552 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04608 5 144611751 144615711 Vivi5g04608 5 144611751 144615711 ECH