Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04481 ATGCACCTCCACAGCCTTCCTCGCTCTCCTCCTTTCTCCACCGGGAAAGCTATCTTTCTCCTTGGTCATCATGGAAGCAGATGGAAGAGTAATTATAATGGATGTGAATTGGAAACAAGACTCTTCCGCAATAATCGTAGAGACAAAGGCGCGAAGAAATGTTTAGGAGCGTCTATATACTGTTCTAGCGATGTTCCGAATGGTTCTTCTCTACCTTCTATTGAGCAATTGAGTAATGCTCGAGTTATATATTCCGTTGCTCCATCCATGGGCCACAACCAGGAGTCTCATCCAGAATCACATTTTAGAGTTCCTGCAATTGTGAAAGCTTTGGAAGAAATGAAACTCACTTCCAAGTTCCGTGGCTCCGAGGTCATTGAACTTCAACATTTTGAGCCTGCTTCGACCGATGACATTGCAAGTGTGCATGCAAGAGCCTATGTTTATGGGCTTGAAAAGGTTATGGATCAAGCTTTGGAGAAGGGCCTTATTCTCATTGAAGGTTCTGGACCAACATATGCTACTTCCACTACCTTCCAGGAGTCAATAGTAGCAGCTGGTGCTGGATTAGCCTTAGTCGACTCAGTGGTTGCAGCTTCAAAGACAACGAAAGATCCACCTACTGGTTTTGCTTTGATAAGACCACCTGGGCATCACGCTGTTCCAAAAGGACCTATGGGATTTTGCATTTTTGGAAATGTGGCCATTGCAGCTCGTCATGCTCAGCGTGTTCATGGACTGAAGCGCGTGTTTATAATTGACTTTGATGTTCATCATGGGAATGGAACAAATGATGCTTTCTATGATGATCCAGACGTATTTTTCCTCTCCTTCCATCAAGATGGAAGCTATCCAGGTACTGGTAAATTTGATGAGGTGGGATCTGGGGATGGTGAAGGAACCACACTTAACCTGCCTCTTCCTGGAGGTTCAGGCGATACCACTATTAGAACTGTGTTCGAAGAAGTTATTGTACCTTGTGCTCAAAGATTTAAGCCAGACATCATTCTTGTGTCTGCGGGGTATGATGGCCACGTGTTAGATCCACTAGCTAATCTTCAACTAACAACAGGAACGTATTACATGCTTGCGTCCAGTATTAAACAACTAGCAAAAGACTTATGTGGTGGTCGATGTGTATTTTTCTTGGAAGGAGGATATAATCTCAAGTCACTTTCATACTCAGTGGCAGACACATTTCGTGCTCTTCTTGGGGACAAAAGCTTAGCATCTGAGTTTGATAACCCAAACATTTTGTATGAAGAGCCAACAAAAAGGGTTAAGCAAGCACTTCAAAGGATAAAACACCTTCATTCCCTGTGA 1323 0.4354 MHLHSLPRSPPFSTGKAIFLLGHHGSRWKSNYNGCELETRLFRNNRRDKGAKKCLGASIYCSSDVPNGSSLPSIEQLSNARVIYSVAPSMGHNQESHPESHFRVPAIVKALEEMKLTSKFRGSEVIELQHFEPASTDDIASVHARAYVYGLEKVMDQALEKGLILIEGSGPTYATSTTFQESIVAAGAGLALVDSVVAASKTTKDPPTGFALIRPPGHHAVPKGPMGFCIFGNVAIAARHAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDVFFLSFHQDGSYPGTGKFDEVGSGDGEGTTLNLPLPGGSGDTTIRTVFEEVIVPCAQRFKPDIILVSAGYDGHVLDPLANLQLTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDKSLASEFDNPNILYEEPTKRVKQALQRIKHLHSL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04481 440 CDD HDAC_classII 97 404 - -
Vivi5g04481 440 PANTHER HISTONE DEACETYLASE 2-RELATED 69 408 - -
Vivi5g04481 440 Gene3D Histone deacetylase domain 73 439 IPR037138 -
Vivi5g04481 440 SUPERFAMILY Arginase/deacetylase 92 407 IPR023696 -
Vivi5g04481 440 Pfam Histone deacetylase domain 97 402 IPR023801 -
Vivi5g04481 440 PRINTS Histone deacetylase superfamily signature 215 238 IPR000286 -
Vivi5g04481 440 PRINTS Histone deacetylase superfamily signature 249 264 IPR000286 -
Vivi5g04481 440 PRINTS Histone deacetylase superfamily signature 333 343 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04481 Vivi-Chr5 142765384 142771746 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04481 - - gmx:100788664 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04481 5 142765384 142771746 Vivi5g04481 5 142765384 142771746 ECH