Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04424 ATGGATTCGGAGCTGAAATCGGCCAAATCCTCTTACCGGACCGCCAAGGAAGAAGGCAACCACCGCGAAGAAGCGCGTTGGGCAAACGTCATCGGCGACATACTCAAGAACAGAGGAGAATACGTCCAAGCCCTCAAATGGATCCGACTCGATTACGAAATTTCTCGCAAATACTTACCTGATAATCAGTTGCTCACAACTTGTCAATCCCTCGGCGAGATCTATCTCCGTCTCGAGCGTTTTAACGAAGCCCTAACTTACCAGAGAAAACATTTAGAGCTTGCTAGGGATGCTAACGACCTCGTTGAGCAACAACGAGCTAGCACACAGCTAGGTCGAACTTACTACGAGCTGTTTTCGAGATCTGAACACGATCACAACTCAGTTCGCAATGCAAAGAAGTATTTCAAGAGTGCAATGGAACTGGCGGTTGCTCTAAAAAAGAATCCGCCTAATAATAAGTCTTCATATCTCAAGGAGTATATTGATGCTTACAACAATATAGGAATGCTTGAAATGGAGATTGATAACTTGCAGGAGGCGCAGAAGATACTTGCTAAAGGATTGGAGATTTGTCACGAAGAGGAGGTTAGTGAGTATGACGATGGGCGTACTAGGTTGCATCATAACCTTGGGAATGTGTATATGGAATTGAGGATGTGGAATGAAGCTAGCAAGCATATTAAGAAGGATATTTTTATTTGTCACAAAATTGGACATCGTCAAGGGGAAGCCAAGGGGTATATTAATCTTGGTGAAATGCATTATAGGACTCAGAAGTATGAAGAAGCGCGGTCTTATTATGAGAAGGCACTTGGTTTGGCAAAGTCCTTGGAGGATGAGGATGCTTTGGTTAGACAAATTAATCAAAATATTGAAATTGTTAAAGAAGCTGTTAAAGTTATGGATGAAATCAAGGGAGAAGAGCAGAAACTTAAAAAACTCAAGAGAGGTATAGCCTCTGCCAGAGGGACACTGCACGAGCGCAACTGTCTGCTACAGCAAAACGGGTCTCTTGAACGCCTTGTTGAGAAAGCAAGGATGATCTCTGCATGGGAGAAGTATTGTGAATTTGCAAAGGAGAAGAAGAAAGTAGCACATGACCTTAGTGACAGGCAAAGGTTGGGTGATTCATATCTTGATGTTGCAGAATCATACCAGAAGCTCAGAAAATTCAACAAGGCAATCAAATGGTACAAAAAGAGCTGGGAAGTGTACAAAACAATTGGTAACTTAGAGGGGCAAGCACTTGTGAAAATTAATATTGGTAATGTTTTGGATTCTACTCACAATTGGAAAGAAGCATTGGATGCATATAAAGAGAGCTACAGGATTGCTGTTGAAGTAAACCTTCCTGATGTACAACTTTCTGCCTTGGAAAATATGCATTATAGCAACATGATCAGATTTGATGACGAGGATGAGACCAGGAGGCTGAAACTTCTAATCGATGAGCTGAAGAAGTCAAATGAAGAGCAAGAAGATAATAGTACGCCTGAGGATTATTGTCCTGAAACTGATAATGAAGAAAATGATTGTATGTCAAATAGCGAGTCTGATGAGTTTTGCTTTCCAAAGAAAACTTATAGATCAGAAACCCTGACATCTGGAGAAGAATTGAATGATGATAATGTGCCTATTAAGTTGCTATATCAGTCCATTAAAGGTTCATCTAGAAATACAAGTCACAAGGGAAGTCCTGCCAACTCTACCATGCAGGTTGACCAGTCACCCAAAAGTGTGACAAAACAAACAAGCAAGCATCAAGAAGTTGTTGGTCGTAAACGTGTCCGTGTAATTCTTTCCGATGATGATGATGATGATGAGATGGAATGCTCAAGCAGAAAGGACCATGACTGTCTTTTAAAGAACTTGCCCAATTGTGATGCAATCGAGAGTAAAATCAGTCCTAGTAAAATTCAGGTTGTCCCGGAGAATGGATCTAAATGTGCAATTAATGTTGAAGAAAGTAGTAGTTCTTTCAAAAGCTGGAGTACAAATACAGCCACTAAATCAGGCAGACATTCTAGATCATTTAGCAATGATTTAGCTGGTGAACCTGAGTTTCACAGTGGTTCTAAATGCGATACAGTTGTCTCTGGCAAAGAAAATGGTGTTGCCCATCCCATGACACATCATTCCCGAGATGATAAATATATTGCATGTCGGATTGGGAATGATATTATTTATGTTGAAGCAGCCTTGTGCGCTGCTGGTGATCATTTCAGCATTGACTCGTTAAAAGCTGCAGTTGCATGCCTATACTATCTACAATTTCCAACAGAAAAGAGATCAGAGGGTTTGTTGCCCATTATTCATCACATAAAATGTGCTGGAAGAGATATAGAATTGCTGGAAAGTGTTGAAAAGCTTAAGGAGCATCTGCAAAACAACATGGTTGAAGCTTTCATTGATGGATGGATTCAGAAGTGCCTAATAAGAATGTACGTAGACCGCTGCAAGGAGTTGAGTGAGGAACCAAAAATCAAGGTGCTGAAGAAACTTTACAATTTAGAGGTATCAGATGATGAAATCATTGTGTCGGACTGTGATCTGCAAGATTTGTCTATAACACCATTGATAGATGCACTGCAATCCCAAATGACATTTTCTTTACTTGATATCTCTCACAATTGCTTAGGAAATGGGACAATGGAGAAACTTCGAAAAGTGTTCACAACATCAGGTCAATCTTACGGTGACTTAACTCTGGATTTGCACTGCAATCGATTTGGCCCAACAGCTTTGTTTCAGATTTGTGAATGCTCTCTACTATTTGCTCGCCTCGAAGTGCTTAACATTTCTGGAAACCGTCTTACTGATGCCTGTGGATCTTATCTTTCAACAATCTTAAAAAACTGTACAGCTCTTTGTAGCTTGGATGTAGAGAACTGCAGTATCACATCCAGAACCATTCAAAAAATTGCTGATGCATTGGACTCTAAATCTGTACTTTCACACCTTTGTATAGGACACAACAGCCCTGTATCTGGGAATGCTTTAGTCAATCTTCTATCCAAGCTTTCTACATTAAAAAGGTTTTCGGAGTTGAATATGAGTGGTCTAAAACTAGGCAAACCGGTAGTCGATAGCCTTTGCCAGCTCACAGGGACCTTGACTTTATCAGGACTAATACTTGGAGGCACTGGTATTGGAAACGAAGGGGCTATGAAAGTAACAGAACCATTGCTAAAAGGGACAGAGGAGCTTGTGAAACTTGACCTATCATATTGTGGGCTAACATCTGATTATATTTTAAACATCAATGTTAGTTCATTTTGTTCCATCCTTGAGCTGAACCTGGAAGGAAATCCCATAATGCTCGAGGGCTGCAATACTCTATTTTCGCTTCTGACAAACCCACAGTGCTGTCTCAAAGTTTTGGTCCTTAGGAAGTGTCAACTTGGGCTTGCTGGAGTTCTTCACATACTTGAGGCTCTTGCAGATAACAGCAGCCTGGAGGAGCTTAATCTTGCTGATAATTCTGTTTCAACGGAACTTTATGTTCTACAATGTGATGTATCAGCTAAAAGCTGCTCACAGAACCAGGAGCAGAAAGTATCAGCTATAAGCTGCTCACAGACCCAGGAGCAGAAAGTATCAGCTAAAAGCTGCTCACAGAACCAGGAGCAGAAACTTGATACTGTGAAAGTTGATGATAATCAAGAGGTGTTATGCCCTCTAAATACTTTCGCCGATCAGCTGGAAGTTGCGGATAGTGAAGATAGGGCAGAAGCTGCTGCTTCTGGAATTGACGACAGCTGTGCTAGTTCATGTCAAAGAAATTCATCTCCCGAGTGCCAATTCACTCAACAATTTTTAACTGCTATTGCAAAGGCAAAGAACTTACAACTACTAGACCTTAGCAATAATAGTTTTTCTGCACAAGCTTCAGAAACATTCTATGGTTCGTGGACAACTTTACGACCCCTTTCAAGTCACAGGCACATAACTAAGCACATTATTCACTTCTCAACCAAGGAAAAGAAGTGCTGCAGTGTGAAACCGTGCTGTAAGAAAGTTTGA 4026 0.4086 MDSELKSAKSSYRTAKEEGNHREEARWANVIGDILKNRGEYVQALKWIRLDYEISRKYLPDNQLLTTCQSLGEIYLRLERFNEALTYQRKHLELARDANDLVEQQRASTQLGRTYYELFSRSEHDHNSVRNAKKYFKSAMELAVALKKNPPNNKSSYLKEYIDAYNNIGMLEMEIDNLQEAQKILAKGLEICHEEEVSEYDDGRTRLHHNLGNVYMELRMWNEASKHIKKDIFICHKIGHRQGEAKGYINLGEMHYRTQKYEEARSYYEKALGLAKSLEDEDALVRQINQNIEIVKEAVKVMDEIKGEEQKLKKLKRGIASARGTLHERNCLLQQNGSLERLVEKARMISAWEKYCEFAKEKKKVAHDLSDRQRLGDSYLDVAESYQKLRKFNKAIKWYKKSWEVYKTIGNLEGQALVKINIGNVLDSTHNWKEALDAYKESYRIAVEVNLPDVQLSALENMHYSNMIRFDDEDETRRLKLLIDELKKSNEEQEDNSTPEDYCPETDNEENDCMSNSESDEFCFPKKTYRSETLTSGEELNDDNVPIKLLYQSIKGSSRNTSHKGSPANSTMQVDQSPKSVTKQTSKHQEVVGRKRVRVILSDDDDDDEMECSSRKDHDCLLKNLPNCDAIESKISPSKIQVVPENGSKCAINVEESSSSFKSWSTNTATKSGRHSRSFSNDLAGEPEFHSGSKCDTVVSGKENGVAHPMTHHSRDDKYIACRIGNDIIYVEAALCAAGDHFSIDSLKAAVACLYYLQFPTEKRSEGLLPIIHHIKCAGRDIELLESVEKLKEHLQNNMVEAFIDGWIQKCLIRMYVDRCKELSEEPKIKVLKKLYNLEVSDDEIIVSDCDLQDLSITPLIDALQSQMTFSLLDISHNCLGNGTMEKLRKVFTTSGQSYGDLTLDLHCNRFGPTALFQICECSLLFARLEVLNISGNRLTDACGSYLSTILKNCTALCSLDVENCSITSRTIQKIADALDSKSVLSHLCIGHNSPVSGNALVNLLSKLSTLKRFSELNMSGLKLGKPVVDSLCQLTGTLTLSGLILGGTGIGNEGAMKVTEPLLKGTEELVKLDLSYCGLTSDYILNINVSSFCSILELNLEGNPIMLEGCNTLFSLLTNPQCCLKVLVLRKCQLGLAGVLHILEALADNSSLEELNLADNSVSTELYVLQCDVSAKSCSQNQEQKVSAISCSQTQEQKVSAKSCSQNQEQKLDTVKVDDNQEVLCPLNTFADQLEVADSEDRAEAAASGIDDSCASSCQRNSSPECQFTQQFLTAIAKAKNLQLLDLSNNSFSAQASETFYGSWTTLRPLSSHRHITKHIIHFSTKEKKCCSVKPCCKKV 1341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04424 1341 Coils Coil 278 325 - -
Vivi5g04424 1341 SUPERFAMILY RNI-like 837 1307 - -
Vivi5g04424 1341 FunFam Protein TONSOKU 819 1191 - -
Vivi5g04424 1341 Gene3D Tetratricopeptide repeat domain 309 469 IPR011990 GO:0005515
Vivi5g04424 1341 Gene3D Tetratricopeptide repeat domain 1 157 IPR011990 GO:0005515
Vivi5g04424 1341 ProSiteProfiles TPR repeat region circular profile. 245 272 - -
Vivi5g04424 1341 MobiDBLite consensus disorder prediction 556 587 - -
Vivi5g04424 1341 Pfam Tetratricopeptide repeat 207 276 - -
Vivi5g04424 1341 Pfam Tetratricopeptide repeat 379 446 - -
Vivi5g04424 1341 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Vivi5g04424 1341 Pfam Tetratricopeptide repeat 67 100 IPR019734 GO:0005515
Vivi5g04424 1341 SUPERFAMILY TPR-like 16 153 IPR011990 GO:0005515
Vivi5g04424 1341 MobiDBLite consensus disorder prediction 488 518 - -
Vivi5g04424 1341 MobiDBLite consensus disorder prediction 496 516 - -
Vivi5g04424 1341 MobiDBLite consensus disorder prediction 556 591 - -
Vivi5g04424 1341 Gene3D Ribonuclease Inhibitor 819 1226 IPR032675 -
Vivi5g04424 1341 Gene3D Tetratricopeptide repeat domain 158 307 IPR011990 GO:0005515
Vivi5g04424 1341 PANTHER PROTEIN TONSOKU 2 1340 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Vivi5g04424 1341 FunFam Protein TONSOKU 1 154 - -
Vivi5g04424 1341 Coils Coil 476 496 - -
Vivi5g04424 1341 SMART LRR_RI_2 1093 1120 - -
Vivi5g04424 1341 SMART LRR_RI_2 1038 1065 - -
Vivi5g04424 1341 SMART LRR_RI_2 926 953 - -
Vivi5g04424 1341 SMART LRR_RI_2 954 981 - -
Vivi5g04424 1341 SMART LRR_RI_2 1122 1149 - -
Vivi5g04424 1341 SMART LRR_RI_2 867 894 - -
Vivi5g04424 1341 SUPERFAMILY TPR-like 145 282 IPR011990 GO:0005515
Vivi5g04424 1341 SUPERFAMILY TPR-like 368 498 IPR011990 GO:0005515
Vivi5g04424 1341 SMART tpr_5 245 278 IPR019734 GO:0005515
Vivi5g04424 1341 SMART tpr_5 162 195 IPR019734 GO:0005515
Vivi5g04424 1341 SMART tpr_5 65 98 IPR019734 GO:0005515
Vivi5g04424 1341 SMART tpr_5 376 409 IPR019734 GO:0005515
Vivi5g04424 1341 SMART tpr_5 416 449 IPR019734 GO:0005515
Vivi5g04424 1341 SMART tpr_5 205 238 IPR019734 GO:0005515
Vivi5g04424 1341 SMART tpr_5 25 58 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04424 - - aprc:113856161 1984.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04424 5 141906056 141921802 Vivi5g04424 5 141906056 141921802 ECH