Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04335 ATGGATTATCAATATATTCTTGGAGGGCTTATTGCTTGTATTTTAGCTGTTGTGTTTGTTTTGTATAGTTTTGCAGAAAAGAAGAAGGTAACAGAAAGAGGTTCAGGTTCAACTGATGTGAAGAGTAATGGATATGCAAAAACATCATCAGAAAATGGAATATGCTCACAAGAGGTTGAAGGAGAAACTGATATTATTGTTGTAGGTGCTGGAGTTGCTGGTGCTGCTCTTGCTTATACTCTTGGAAAGGATGGACGGCGAGTACATGTGATTGAAAGAGACTTGACCGAACCTGATAGGATTGTGGGTGAACTGCTACAGCCTGGTGGCTATCTAAAGTTACTTGAGTTAGGTCTTGAAGATTGCGTGGATGAAATTGATGCACAAAGAGTCTTTGGCTATGCTCTTTATAAGGATGGGAAAAACACCAAATTGTCTTATCCCTTGGAAAATTTTGACTCTGATGTATCTGGAAGAAGCTTTCACAATGGTCGTTTCATACAAAGAATGCGAGAAAAGGCTTCATCTCTTCCAAATGTAAAATTAGAACAAGGAACTGTCACATCTTTACTTGACGAAAACGGAACCATCAAAGGAGTAATCTATAAAAACAAGAGTGGACAAGAGTTTACAACAAAGGCTCCTCTTACCATAGTATGTGATGGTTGTTTTTCAAACTTGAGACGCACTCTTTGTAATCCTAAGGTTGAAGTTCCTTCTCATTTTGTTGGATTGGTATTGAAGAATTGTAACCTTCCATATGAAAATCATGGACATGTTATCTTAGGTGATCCTTCACCAATTTTGTTTTATCCTATAAGTAGTACCGAGATTCGTTGTTTGGTTGATGTGCCTGGCCAAAAACTACCTTCTGTTGGTAATGGTGAAATGGCTCACTATTTGAAAACTGTGGTAGCACCTCAGGTTCCTCCAGAGTTGTATACTTCTTTTGTAGCAGCAGTTAATAAAGGAAACATCAGAAGCATGCCAAATAGAAGCATGCCTGCTGCGCCTTATCCCACACCCGGGGCTCTTCTGATGGGAGACGCGTTCAATATGCGCCACCCTTTGACGGGAGGTGGAATGACGGTTGCTTTGTCTGACATTGTTCTGCTAAGGAATCTACTCAAACCTCTACATAATCTTCATGATGCTTCTGCCCTTTGCAACTACCTTGAATCTTTCTACACACTAAGAAAGCCGGTGGCATCTACAATAAACACATTAGCAGGTGCATTATACAAAGTGTTTTGTGCATCTCCTGATCCAGCGAGCATAGAAATGCGCCAAGCATGTTTTGATTATTTGAGCCTCGGAGGTGTTTTCTCGAACGGACCAATAGCTTTACTCTCTGGTCTGAATCCTCGGCCGCTGAGCTTGGTTCTCCATTTCTTCGCGGTGGCAATATACGGAGTCGGCCGCCTGTTGATTCCGTTTCCATCCCCGAACCGAATGTGGATCGGAGCTAGACTAATTTCAGGTGCATCAGGTATAATATTTCCAATTATTAAGGCAGAAGGGGTAAGACAAATGTTTTTCCCAGCAAGTGTGCCAGCATATTACAGAACTCCTCCTGTCCAATAA 1584 0.4141 MDYQYILGGLIACILAVVFVLYSFAEKKKVTERGSGSTDVKSNGYAKTSSENGICSQEVEGETDIIVVGAGVAGAALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLLELGLEDCVDEIDAQRVFGYALYKDGKNTKLSYPLENFDSDVSGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLDENGTIKGVIYKNKSGQEFTTKAPLTIVCDGCFSNLRRTLCNPKVEVPSHFVGLVLKNCNLPYENHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSVGNGEMAHYLKTVVAPQVPPELYTSFVAAVNKGNIRSMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLKPLHNLHDASALCNYLESFYTLRKPVASTINTLAGALYKVFCASPDPASIEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPNRMWIGARLISGASGIIFPIIKAEGVRQMFFPASVPAYYRTPPVQ 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04335 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 213 228 - -
Vivi5g04335 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 341 356 - -
Vivi5g04335 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 64 86 - -
Vivi5g04335 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 356 372 - -
Vivi5g04335 527 Gene3D - 57 434 IPR036188 -
Vivi5g04335 527 SUPERFAMILY FAD/NAD(P)-binding domain 62 438 IPR036188 -
Vivi5g04335 527 PANTHER SQUALENE MONOOXYGENASE 8 525 IPR040125 GO:0004506|GO:0016126
Vivi5g04335 527 FunFam Squalene monooxygenase 2 57 437 - -
Vivi5g04335 527 Pfam NAD(P)-binding Rossmann-like domain 67 93 - -
Vivi5g04335 527 Pfam Squalene epoxidase 213 486 IPR013698 GO:0004506|GO:0016020|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04335 Vivi-Chr5 140839909 140842780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04335 56 525 Miscellaneous Gene Families AT1G58440 79.873 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04335 K00511 - gmx:100800329 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04335 5 140839909 140842780 Vivi5g04335 5 140839909 140842780 ECH
Vivi5g04335 5 140839909 140842780 Vivi5g04335 5 140839909 140842780 PCT