Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04333 ATGTCTATAACCCAAAACCTCACCCTTTCAATCTCTTCTGCTTCCTCTCCTTTCTTAGCTCCTTCCAATTTCAATTCCAGGAGTCAGGTTTCTTTGCATTCTAAGAGCCCCTTCATTTGTAAATGCGTCGCTACACCCCAAGAAGCTGAGACTGCCTACAAGACAAGGGTCTCTCGCAATGAAAACTTGGGTAAACTTCAAGCTGGTTATCTCTTTCCTGAGATTGGTAGAAGAAAGTCTGCACACTTGCTGAAGTACCCTGATGCAAAAATAATAAGCCTTGGGATTGGTGATACTACTGAACCCATTCCTGAAGTCATAAGTTCTGCATTGGCAAAGAAATCACTTGCATTGTCAACCTTGGAAGGATACAGTGGTTATGGAGCTGAACAGGGTGAAAAGCCACTAAGAAGTGCAATTGCTTCAACATTTTACCCTGATCTTGGCATAGAAGATGATGATATATTTGTCTCAGACGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTTGGTTCAAATGTGAAAATGGCTGTGCAGGACCCATCATACCCGGCCTATGTAGACTCAAGTGTAATTATGGGCCAGACTGGTTTGTACCAGAAGGATGTTCAGAAGTTTGCGAATATTGAATATATGAGGTGTAACCCGGAGAATGGGTTCTTCCCTGATTTATCTTCTATTTCTCGACCGGATATAATATTTTTCTGTTCTCCAAACAATCCTACTGGTGCTGCAGCAACAAGGGAACAACTGGTCCAACTAGTTCGGTATGCTAAGGACAATGGATCTATAATAATACATGATTCAGCATATGCTATGTATATGTCTGGTGACAACCCGCGCTCCATCTTTGAAATTCCCGGAGCCAAAGAGGTTGCCATTGAAACTTCGTCATTTAGCAAGTATGCTGGGTTCACTGGAGTCCGATTGGGTTGGTCTGTGGTTCCAAAAGAATTACTGTTTTCTGATGGATTTCCTGTTGCCAAGGACTTTAGCCGTATCGTGTCTACTTGTTTCAATGGTGCATCAAATATTTCTCAGGCTGGTGGTCTTGCATGCCTTTCACCAGATGGCCTTAAGGCTATGCGCGGGGTAATTGGATACTACAAAGAAAACACCAATATAATAATGGAGACATTTGATTCTCTTGGGTTTAAAGTGTATGGAGGGAAAAATGCACCGTATGTGTGGGTCCACTTCCCAGGCCAAAGTTCATGGGATGTGTTCAGTGAGATTCTTGAGAAGACACACGTGGTGACAACTCCTGGGAGTGGTTTTGGACCTGGTGGTGAAGGTTTTGTCAGGGTCAGTGCTTTTGGTCACCGGGAAAATGTCTTGGAGGCATGCAGAAGATTCAAGCAACTATACAAATGA 1380 0.4319 MSITQNLTLSISSASSPFLAPSNFNSRSQVSLHSKSPFICKCVATPQEAETAYKTRVSRNENLGKLQAGYLFPEIGRRKSAHLLKYPDAKIISLGIGDTTEPIPEVISSALAKKSLALSTLEGYSGYGAEQGEKPLRSAIASTFYPDLGIEDDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDVQKFANIEYMRCNPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLVQLVRYAKDNGSIIIHDSAYAMYMSGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWSVVPKELLFSDGFPVAKDFSRIVSTCFNGASNISQAGGLACLSPDGLKAMRGVIGYYKENTNIIMETFDSLGFKVYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACRRFKQLYK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04333 459 CDD AAT_like 92 456 - -
Vivi5g04333 459 Hamap LL-diaminopimelate aminotransferase [dapL]. 58 457 IPR019942 GO:0008483
Vivi5g04333 459 Gene3D Aspartate Aminotransferase, domain 1 71 455 IPR015422 GO:0003824
Vivi5g04333 459 FunFam LL-diaminopimelate aminotransferase, chloroplastic 101 358 - -
Vivi5g04333 459 SUPERFAMILY PLP-dependent transferases 70 454 IPR015424 -
Vivi5g04333 459 PANTHER AMINOTRANSFERASE 6 459 IPR019942 GO:0008483
Vivi5g04333 459 Gene3D - 101 358 IPR015421 GO:0003824
Vivi5g04333 459 FunFam LL-diaminopimelate aminotransferase, chloroplastic 344 455 - -
Vivi5g04333 459 Pfam Aminotransferase class I and II 90 454 IPR004839 GO:0009058|GO:0030170
Vivi5g04333 459 NCBIfam LL-diaminopimelate aminotransferase 58 456 IPR019942 GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04333 Vivi-Chr5 140825394 140829368 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04333 K10206 - gmx:100801405 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04333 5 140825394 140829368 Vivi5g04333 5 140825394 140829368 ECH