Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04325 ATGAAGTCTTCAAATATTCCCTTGATCTTAGCCATTTTCTCCATGTGCTGTTTCATTTGCTCAGCACACAACGAGCCACATGACTACCTAGACGCGCACAATGAGGCTCGTGCCGAGGTTGGTGTCGGTCCTCTCGAATGGAGCCCTACCCTTGCAGAATATGCTGACAACTATGCCAAATCAAAGATCGAAACCTGCGAAATGGAACACTCCGGCGGGCCTTATGGCGAGAATCTTGCCGGGAGTTCCGACCCGGAAATGACTGCTGCCGATGCTGTGAAATTGTGGCTGGATGAGAAGAAATACTACAATCACGAAACGAACTCTTGTGAAAATGAAGAATGCTTGCATTATACACAGGTTATTTGGCAGAATACTTCTCATGTTGGTTGTGCTAGGGAAAATTGTAAGAGTGGATGGACGTATATCATTTGTAGCTATGATCCACCAGGAAATTTTGTAGGAGATAAAGCTTACTAG 480 0.4521 MKSSNIPLILAIFSMCCFICSAHNEPHDYLDAHNEARAEVGVGPLEWSPTLAEYADNYAKSKIETCEMEHSGGPYGENLAGSSDPEMTAADAVKLWLDEKKYYNHETNSCENEECLHYTQVIWQNTSHVGCARENCKSGWTYIICSYDPPGNFVGDKAY 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04325 159 PRINTS Allergen V5/Tpx-1 family signature 92 105 IPR001283 -
Vivi5g04325 159 PRINTS Allergen V5/Tpx-1 family signature 115 131 IPR001283 -
Vivi5g04325 159 PRINTS Allergen V5/Tpx-1 family signature 45 63 IPR001283 -
Vivi5g04325 159 PRINTS Allergen V5/Tpx-1 family signature 142 155 IPR001283 -
Vivi5g04325 159 SUPERFAMILY PR-1-like 25 159 IPR035940 -
Vivi5g04325 159 FunFam Putative pathogenesis-related protein 1 23 159 - -
Vivi5g04325 159 ProSitePatterns CRISP family signature 2. 142 153 IPR018244 GO:0005576
Vivi5g04325 159 CDD CAP_PR-1 26 159 - -
Vivi5g04325 159 Pfam Cysteine-rich secretory protein family 30 147 IPR014044 -
Vivi5g04325 159 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 28 156 IPR001283 -
Vivi5g04325 159 Gene3D CAP 20 159 IPR035940 -
Vivi5g04325 159 SMART SCP_3 24 155 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04325 Vivi-Chr5 140712894 140713592 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04325 K13449 - zju:107427102 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04325 5 140712894 140713592 Vivi5g04325 5 140712894 140713592 ECH