Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04154 AAACTTGTTGAAGAAGCCATGCAACGTTTATCTGCTACCTTGTACCGTAAAATGGCTCATCGATCATCATGCGACGTGTTCATAAATCATCGAGGAGTCGACACCAAGAGGAACATCGCGGGGTTGTTGTACGATCGGTTGACGAAGATGGGAGTGAGATCGTTTCTGGATAGCAAGAATATGAAACCTGGGGATAGGTTGTTTGATCATATTGATAGAGGAATTCTTGGTTGCAAAGTTGGTGTTGCGGTTTTTTCGCCGACTTATTGTGACTCTTATTTTTGTCTCCATGAGCTTGCTCTTCTCATGGAGTCGAAGAAGAGAGTTATCCCGATTTTCTATGATGTTAAGCCTTCTGAGCTTGTTGTTAAGGATAATGGAAGTTGTCCTGTTAAAGAGCTTCGAAGGTTTAGTGCTGCATTAGAGGAAGCTAAATTCACTGTTGGATTGACCTTCGATTCTTCCAATAGGGACTGGTCGGTGTTGTTAAGAGATGCTTCAGAAGCAGTGATCATGAACTTGTTGGAGGTAGAAGAAGCGCGTAAGCTCATGAAGAAAAAAACATTGAATACTAATCACAAGTAG 585 0.4188 KLVEEAMQRLSATLYRKMAHRSSCDVFINHRGVDTKRNIAGLLYDRLTKMGVRSFLDSKNMKPGDRLFDHIDRGILGCKVGVAVFSPTYCDSYFCLHELALLMESKKRVIPIFYDVKPSELVVKDNGSCPVKELRRFSAALEEAKFTVGLTFDSSNRDWSVLLRDASEAVIMNLLEVEEARKLMKKKTLNTNHK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04154 194 PANTHER COP1-INTERACTING PROTEIN-RELATED 20 189 - -
Vivi5g04154 194 Gene3D - 1 148 IPR035897 -
Vivi5g04154 194 SMART till_3 23 156 IPR000157 GO:0007165
Vivi5g04154 194 ProSiteProfiles TIR domain profile. 22 170 IPR000157 GO:0007165
Vivi5g04154 194 Pfam TIR domain 25 121 IPR000157 GO:0007165
Vivi5g04154 194 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 121 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04154 Vivi-Chr5 138077749 138078665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04154 21 153 Miscellaneous Gene Families AT1G57670 31.081 7.13e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04154 - - gmx:100798207 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04154 5 138077749 138078665 Vivi5g04154 5 138077749 138078665 ECH
Vivi5g04154 5 138077749 138078665 Vivi5g04154 5 138077749 138078665 PCT