Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04106 ATGGATGCTATGAGTAGTGATTCGGAATGGGAGACTTCGAGTGACAGCAGCAGCAGTGAGGATCAAGAAGAAAATGATTTTCAATACGGTGGTCAAGCTCAGAGCATATTATCAAATTTAGAGGAAAGCATTGGGAAGATTGATGATTTTCTTTCATTTGAGAGAGCTTTTGTTCATGGTGATGTGGTCTGCTCCTTGTCATATCAGACAGGACAGATGGGGAGGGTCACAAACGTTGATGTGTTTGCGGATTTGGAAAATGTGAAAGGAAAGGTATTCAAAAACGTAAACTCCAAGAAACTTTCGAAGATTCGCTCTATTTCGGAAGGTGATTATGTAATTAAGGGGCCATGGCTCGGTCGGGTCCAACGGGTCGTGGACAAAGTGACTGTATTGTTTGATGATGGAGCTAAATCTGATATCATTGCCTTGGAAAGAGAAAAACTTTTACCACTGACTTGTAAATTTTCGGAAGATTTGCAGTGTCCATACTATCCAGGACAGAGAGTAAAGGTTAAGTCCTCTGATGGTTCTAAATCAGCAGGATGGCTTTGTGGAACTTGGAGAAACATCCAAGATGAAGGAACTGTTTGCGCTGTGGATACAGGTTTGGTGCATGTTAACTGGATGGCTTCTGTTCTTTCGAGTAGCAATTTGAATGTGAATGCTCCACCATGCTGGCAAGACTCTAGAAACTTGACCGTGTTGCCATGTTTTTCGGACACGAACTGGCAACTTGGTGATTGGTGTGTGCTCTCGGTTGCAGACAAAGAGGAACAGATTATTATGAAGCATAGTATGACAAGAGCGTGTAAGAGTGAGGGAAAAAACCTTAACTCTCATATTGAGGAATTGTTTATAATTGGGAAGATAAAGACCAAAGTTGACATTTTGTGGCAAAATGGTGAGCAGAGTCTGGGATTAGATCCAGAGAGTTTACTCCCAGTGAATGTTATAAACACGCATGAATTTTGGCCTCATCAATTTGTGCTGGAAAAAGGTACTTCTTATGATCCTCTTCAGCCTAATAGTCAAAGATGGGGTGTTGTCCAATGTGTTGATGCAAAGGAGCATACTGTAAAGGTAAAATGGAATAATGTTTCCATATCCAAACCTAATGATTTGGATGGAGACGAAATGGAGGAAACTGTGAGTGCCTACGAACTTGTAGAGCACCCAGACTACTCGTGTTTTTTTGGTGATATTATGTTCAAGGCGGCTCAAAAACAGTTTAAAGAAATTTCGGTAGATGACATGAATATGGAGGCTTCTCTTAGAAACGGGAACCAGATGAGTTATCAGGATGACTTCCCTGATGACTGTTACCTGTCCTGTGTTGGCACTGTTACTGGTTTCAGAGATAGTAATGTGGAGGTGAAATTGGCTACTGGTTTCACAACCAAGGTTGCACCGTATGAAATTTTTCGGATTGATAAACATGAAGGCTCAACTGTAACCCCTGCTCCTCAAGAGATGATTGAACGCGGAAGTCTACCCTTTGACAAGAAGGGAAAGGATTTGATAAATTGTGATAGTAAAAATGAGAATTGTGAAAAGAACCTTGAGGAGTGTAGTCCCTTTTTCCTTCCTCAAGCTGCCTCTGAAATCTTCTCAAGCATTAAATCCAGCATATTCCAAACACTAGGTGGAACTTCAGTTACAGGAGCATTTTCATCAGTGCCTACATTTGAAAAGGATCATGAATCTGATTTTTCTGATGAGAAAGAGTCAGAAACTTGTAACCTCTGCATTGAACCACATCCAACAACTGAGTTGAAATCTACTGAAGACACAACTTCATATCCAGAAGTTATTAGGATCAATGACAAGAATGAGTTTCCAGTTTCTTTAGACAACAACAGTTCAAACCAATTTAAGCAGTTTGATGTTATAGAAAGCTGCTCTGAGGACCACCAATTTTTTGATGAGGGGAAAGGATCACCAATGTTGCAGATAAAAAGAAGCTGGGTAAAAAAGGTTCAGCAAGAATGGAGCATCCTTGAAAAAAATCTTCCTGACTCTATTTATGTTCGGGCATATGAGGAAAGAATGGATCTCATGCGAGCAGCTATTGTTGGTGCATCTGGAACTCCGTATCAAGACGGATTGTTTTTCTTTGATATATGTTTCCCTCCGGAATATCCCAACGAACCACCTATGGTGCACTACAACTCTGGCGGGCTCCGCTTAAATCCTAATTTGTACGAGTCAGGGAAAATCTGTCTGAGTCTCCTAAATACTTGGACAGGCGCAGGCAGTGAAGTGTGGAATCCTGGAACCTCTACTATTCTTCAAGTTCTTATCTCTCTGCAGGCTCTTGTCCTTAATGAGAAGCCTTATTTTAATGAAGCTGGATATGACCAACAAATAGGCAGAGCTGAGGGAGAGAAAAACTCTGTGAGCTATAATGAGAATGCTTTCCTTGTCACAACCAAATCTATGTTGTATCTATTAAGAAAGCCACCAAAGCATTTTGAAGCACTGGTGGAAGAGCACTTCAGACAGCATTCCAAACATATACTTTCCGCTTGTAAGGCATATCTTGAAGGAGCTTCCATTGGATGTGGAAAAACTGAACAAGAAAACCAGAAGGGGACTTCTACAGGATTTAAAATAATGCTTGCTAAGCTCTTCCCCAGGCTTGTAGAGGCATTTTCTTACAAGGACATCGAATCCAGTCAGTTTTCTTGA 2691 0.4095 MDAMSSDSEWETSSDSSSSEDQEENDFQYGGQAQSILSNLEESIGKIDDFLSFERAFVHGDVVCSLSYQTGQMGRVTNVDVFADLENVKGKVFKNVNSKKLSKIRSISEGDYVIKGPWLGRVQRVVDKVTVLFDDGAKSDIIALEREKLLPLTCKFSEDLQCPYYPGQRVKVKSSDGSKSAGWLCGTWRNIQDEGTVCAVDTGLVHVNWMASVLSSSNLNVNAPPCWQDSRNLTVLPCFSDTNWQLGDWCVLSVADKEEQIIMKHSMTRACKSEGKNLNSHIEELFIIGKIKTKVDILWQNGEQSLGLDPESLLPVNVINTHEFWPHQFVLEKGTSYDPLQPNSQRWGVVQCVDAKEHTVKVKWNNVSISKPNDLDGDEMEETVSAYELVEHPDYSCFFGDIMFKAAQKQFKEISVDDMNMEASLRNGNQMSYQDDFPDDCYLSCVGTVTGFRDSNVEVKLATGFTTKVAPYEIFRIDKHEGSTVTPAPQEMIERGSLPFDKKGKDLINCDSKNENCEKNLEECSPFFLPQAASEIFSSIKSSIFQTLGGTSVTGAFSSVPTFEKDHESDFSDEKESETCNLCIEPHPTTELKSTEDTTSYPEVIRINDKNEFPVSLDNNSSNQFKQFDVIESCSEDHQFFDEGKGSPMLQIKRSWVKKVQQEWSILEKNLPDSIYVRAYEERMDLMRAAIVGASGTPYQDGLFFFDICFPPEYPNEPPMVHYNSGGLRLNPNLYESGKICLSLLNTWTGAGSEVWNPGTSTILQVLISLQALVLNEKPYFNEAGYDQQIGRAEGEKNSVSYNENAFLVTTKSMLYLLRKPPKHFEALVEEHFRQHSKHILSACKAYLEGASIGCGKTEQENQKGTSTGFKIMLAKLFPRLVEAFSYKDIESSQFS 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04106 896 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 4 886 - -
Vivi5g04106 896 Pfam Ubiquitin-conjugating enzyme 660 806 IPR000608 -
Vivi5g04106 896 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 655 815 IPR000608 -
Vivi5g04106 896 Gene3D Ubiquitin Conjugating Enzyme 616 892 IPR016135 -
Vivi5g04106 896 MobiDBLite consensus disorder prediction 1 27 - -
Vivi5g04106 896 CDD UBCc 657 810 IPR000608 -
Vivi5g04106 896 FunFam Probable ubiquitin-conjugating enzyme E2 23 616 889 - -
Vivi5g04106 896 SUPERFAMILY UBC-like 651 824 IPR016135 -
Vivi5g04106 896 SMART ubc_7 658 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04106 Vivi-Chr5 137408822 137414327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04106 21 894 Miscellaneous Gene Families AT2G33770 48.448 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04106 K10581 - gmx:100306246 1347.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04106 5 137408822 137414327 Vivi5g04106 5 137408822 137414327 ECH